Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1799 ATGAATTTCCAAGATCCCTTTATTCTGAAGAATTGTCTCTATTCTCTTCCCTCTGCTGTGGTTTACATTTGGAATTTATCTACTCCCCTATTTAAGTCACCTTGTTTAAACTTAGCTGTCCAACCACTCCACATGCACCTCAGAAACGTCCAACCGGAAAAAAATGAAGTGTCATGCAAGACAGAGAGACGTAAGAGTGCGTTAGAAGCAGCTACAGAGCATCATGGCCTTATGGTTGTGGAGGCACTGAACTCAGAAGCTTTACGACACTCGTCCTTTTCTGAGTTTAATGAAGTAGTGGATCACTCCAATGTGGTAGAGATCGACGCACCGCTTTGTGATGGGTTGGGCAGCTTTGGAGTGGCTTTTACATGGAAATTAAAAGATGAGTTAGAGATGCAGGAGGGCTGTGGATGTGATACTGAGAGTGAGAGCATGAGTAAGCCCATTTGTGATTGGGCTAGACTGAACATGGGCCTAGATGAAGTTGAACTATTTGTGGGATTTCTCATGGGGCCCCTTAGGATCTACCTCTGTGAATTCAACCTCCCAAGGCCCACACTCCCCGCCGGTTTCACCAATCCCCGCCCTCCCCCTGGAGCGCGTTTGCTTGATGCCCTTTCTCTTGTGCTTGACCCACCCATCCGCCGCTTCTCTGACCCTGAATTTGAGCATCCACACTTTCCTAGGATTCAGGGAAGGCCTCACGAACATGAAGGCCAAACTCGTGAGAACCCATGTGTTGAAATTCCGGTTCGTCGAATAGTCGTCCCCGACATCTTAGTTTTGATTCCAGAGATGGTGGTTTCGACCCTGAACGAGAAACCCAGCCTCGTCCTCGGAGCAAGGCCCGCCTCCAGCCCCGGAAACAGAGCCATCGAAGCAATTCCGACGGTGAAAATATTGGAGATCCATCTGAAGGAGAACCCTGATTGCCCGGTCTGCCAGGAGGAGTTTGAAGTGGGCTGTGAAGCGAGGGAGTTAGCCTGCAAGCATATGTACCATTCTGATTGCATCGTGCCATGGCTAAAGCTCCACAATTCTTGCCCCGTTTGCAGGCACGAGGTGCGGGTGCATTCTGACTACGACCAATCAAGTGGCGGTGGCGGGGGAAGGTTGCGGCGGGGTTTGAGGTGGAGTCAGTTGGCTTTACTTTGGCCTTTCCATGGAAGGTTCCGAGGGGTTAACCCCGAAGGGTAG 1200 0.505 MNFQDPFILKNCLYSLPSAVVYIWNLSTPLFKSPCLNLAVQPLHMHLRNVQPEKNEVSCKTERRKSALEAATEHHGLMVVEALNSEALRHSSFSEFNEVVDHSNVVEIDAPLCDGLGSFGVAFTWKLKDELEMQEGCGCDTESESMSKPICDWARLNMGLDEVELFVGFLMGPLRIYLCEFNLPRPTLPAGFTNPRPPPGARLLDALSLVLDPPIRRFSDPEFEHPHFPRIQGRPHEHEGQTRENPCVEIPVRRIVVPDILVLIPEMVVSTLNEKPSLVLGARPASSPGNRAIEAIPTVKILEIHLKENPDCPVCQEEFEVGCEARELACKHMYHSDCIVPWLKLHNSCPVCRHEVRVHSDYDQSSGGGGGRLRRGLRWSQLALLWPFHGRFRGVNPEG 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1799 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 358 IPR013083 -
Lele27g1799 399 SUPERFAMILY RING/U-box 292 359 - -
Lele27g1799 399 FunFam E3 ubiquitin-protein ligase RING1-like 273 359 - -
Lele27g1799 399 Pfam Ring finger domain 311 353 IPR001841 -
Lele27g1799 399 ProSiteProfiles Zinc finger RING-type profile. 312 353 IPR001841 -
Lele27g1799 399 SMART ring_2 312 352 IPR001841 -
Lele27g1799 399 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 228 356 - -
Lele27g1799 399 CDD RING-H2_RNF126_like 311 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1799 Lele-ChrLele27 23011768 23019844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1799 276 388 C3H Transcription Factor Family AT1G68180 42.241 6.14e-22 92.0