LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele27g1786	ATGAAGCCCATTGAGCCCGCTAACTCTGGCAATCATTACCGCCAAACGGGACATTTCAAAAGCTGTGTCTCTGTTGCAACAAAAAAACATTTTTGTGTCTCCGTCCGGCTACGACCCCAGACGCAGGCACTCGACAATTTCCCGAAATGCCGTGGAGATTACTCCATGGATGGGAAGGCTAACCTTCCGGTCTCACCTCCGACCGCCAAGAACCTGTTCCGCCCAATCAATACCGATACTACATCGTCTTCGTCATCCTCCCTCTCTTCTTCCTCACCGCCGGACTTCCTCCGGCATGTTCAAGCCGCCTTCAAGCGTCATCGTCCTATCGGTACAGTGCAATCAAATATAAGACCAAGGCGCATGATGGTTCCTCAACGTGAGGTGTCAAGAAATTCTACACCGAAAGTCGGTCCAAATGTAGATGATAAGAAGGCGCAGGAGATATATTCAATTAAGGTTCAGTCGGAGATGGAGTCATGTGCACATAGAAATAGCACGAATTCTATGATTGGAGAAGGTCAAGAGGACGTATTAATCACGCCTCCTTCTGTTTCTGGCAGTTGCTACAATGCGCTTGACAAAGGATGCAATCCATGCAATGCACAAGAATGTCATTTAAATGTAATGACTAATTGTAAAGACAAGGTTGTCATGCATTCTTTGCCAGTGGAGTCTCAAAATGTAGACGGTCAGAAGAAAGTCCAGTTCTCAGTAGGAAACAACACTACTGCCCAGGGGGCCGATGATGGAAAGGCCACTGAGTTGGAGAACTTATCATCTCATATGGGTTCACTTGCATTGACAGAAATGGAATGGGCTGCAAGCACCCAGCCGGAAGAATTTAATTTATTCAATCAAGATCGAAAGCATCAAAGTGTTTTGCAGGCAGAGTCTGAACTAACTTTGAGATCCGATGGAGGATTAAATTCCCAGTTGGCTAAAAGAACAACAGCTATTCAGGATCATCTGCAGCAATTCAGAAACTTTTTAAGTCAGCCAGCTACTCAATCTTCAGTAGTGGGACCTTCATGTGCTACCACAACATCTGTCCATTCATCTTCAGCTCCTATGCTAAATTCAACAACCCATTATTCTCATTCACATGTTGATAGTGGTTCACATGCGGCAGCAGAACCTTTGAGGGAAAATAATGTTAATAGTCATCTGATAACTCAAGGAGTTGTGAAATCATCTAGCACTTACCTAACAGAGACCAATAAAATGTCAGTGGATCAAGCAGCAGTTGAATCTAGTTCTGCCATTAATACAGGGTTACCATCTAAGGATGGTGACCTATGTAAGGAGCAGCAAGGCAGCATGCTAAAGGAAAGTAACATTTCTAATACTACTTGTGATGATAAGCCATATAAGGGTAAAGAATCTTCAGGTGTTACGAACATACAACCTCAGGCTCCAATGTCTAGAACTTCATTTTCAGATGTTAGGTTGGACTCGTCTAAGTCAGAAAAACAAGAGAAGGCTGTAAGTAGTAAAGGCACATCAACTACTCGGAAAAGGGCCTATGACCCTGATATGTTTTTCAAAGTAAATGGTAAGCTGTATCAAAGGCTTGGCAAGATAGGTAGCGGAGGAAGTAGTGAAGTACACAAAGTAATATCATCAGACTGTACAATCTATGCACTTAAAAAGATCAAGCTAAAGGGCCGTGATTATGCCACTGCATATGGGTTCTGCCAAGAGATTGAGTATCTAAATAGGCTGAAGGGAAAGAATAATATTATACAGCTGATTGACTATGAGGTGACTGACAAGACTTTGCTTGATGAAGTCCTGAGAGGCTCCTTGAGTAGTAAAGAGAGCCGAGTCAAGGATGATGGATATATATACATGGTTCTTGAATATGGGGAAATTGATTTGGCTCATATGCTGTCTCAGAAGTGGAAGGAACTGGATGGACACAACCAGACCATAGATGAGAATTGGCTTCGATTTTATTGGCAGCAAATACTTCAAGCTGTCAATACAATACACGAGGAACGTATAGTGCATTCTGACCTGAAGCCAGCCAATTTTCTTCTTGTCAAAGGTTCCCTAAAACTGATTGATTTTGGCATAGCCAAAGCAATAATGAGCGATACAACAAATATCCAACGGGATTCACAGGTGGGTACTCTGAGTTACATGTCTCCAGAGGCATTTATGTGCAATGAGAGTGATGCAAATGGAAATATCATAAAGTGTGGCCGACCATCGGACATTTGGTCTCTGGGCTGCATTCTCTATCAAATGGTATATGGCAGGACGCCATTTTCAGAGTACAAGACGTTCTGGGCCAAATTCAAAGTCATAACAGATCCTAATCATGAAATTACGTATGAACCCGTTTCAAACCCATGGCTCCTGGATCTCATGAAGAGGTGTCTAGCATGGGACCGTAATGAAAGATGGAGAATTCCTCAGCTTCTCCAACATCCGTTTCTTGTTCCGCCAACTCCCCCACAGCCTTCCCGGTCCCAAGATCAAAGCTTTAAATTGCTACAATTTATAGCTGAAACTTGGATAGATGACCCAGAAGCTTCAAAGCTCTGTTGTCAGCTCCAGCAGGTGGTTGGCGATCCACTCAAGTTAATAACTCCCCACTCTCTTAGCTCACGAGATCAACAATGTAAACTATTGTCGCAATTGTCTGAACTTTGCCTCCAGCTGCATGAGCGACTAAAAAGTTCGGCTAGAGAACCAAAGATAGATTCATGA	2718	0.4319	MKPIEPANSGNHYRQTGHFKSCVSVATKKHFCVSVRLRPQTQALDNFPKCRGDYSMDGKANLPVSPPTAKNLFRPINTDTTSSSSSSLSSSSPPDFLRHVQAAFKRHRPIGTVQSNIRPRRMMVPQREVSRNSTPKVGPNVDDKKAQEIYSIKVQSEMESCAHRNSTNSMIGEGQEDVLITPPSVSGSCYNALDKGCNPCNAQECHLNVMTNCKDKVVMHSLPVESQNVDGQKKVQFSVGNNTTAQGADDGKATELENLSSHMGSLALTEMEWAASTQPEEFNLFNQDRKHQSVLQAESELTLRSDGGLNSQLAKRTTAIQDHLQQFRNFLSQPATQSSVVGPSCATTTSVHSSSAPMLNSTTHYSHSHVDSGSHAAAEPLRENNVNSHLITQGVVKSSSTYLTETNKMSVDQAAVESSSAINTGLPSKDGDLCKEQQGSMLKESNISNTTCDDKPYKGKESSGVTNIQPQAPMSRTSFSDVRLDSSKSEKQEKAVSSKGTSTTRKRAYDPDMFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKKIKLKGRDYATAYGFCQEIEYLNRLKGKNNIIQLIDYEVTDKTLLDEVLRGSLSSKESRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGHNQTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNESDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPNHEITYEPVSNPWLLDLMKRCLAWDRNERWRIPQLLQHPFLVPPTPPQPSRSQDQSFKLLQFIAETWIDDPEASKLCCQLQQVVGDPLKLITPHSLSSRDQQCKLLSQLSELCLQLHERLKSSAREPKIDS	905

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele27g1786	905	MobiDBLite	consensus disorder prediction	349	376	-	-
	Lele27g1786	905	CDD	PKc_Mps1	520	815	-	-
	Lele27g1786	905	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	669	681	IPR008271	GO:0004672\|GO:0006468
	Lele27g1786	905	MobiDBLite	consensus disorder prediction	71	94	-	-
	Lele27g1786	905	Gene3D	Phosphorylase Kinase; domain 1	515	599	-	-
	Lele27g1786	905	Gene3D	Transferase(Phosphotransferase) domain 1	636	818	-	-
	Lele27g1786	905	FunFam	serine/threonine-protein kinase mph1 isoform X2	515	602	-	-
	Lele27g1786	905	PANTHER	MIXED LINEAGE PROTEIN KINASE	79	833	-	-
	Lele27g1786	905	MobiDBLite	consensus disorder prediction	58	94	-	-
	Lele27g1786	905	ProSitePatterns	Protein kinases ATP-binding region signature.	528	550	IPR017441	GO:0005524
	Lele27g1786	905	MobiDBLite	consensus disorder prediction	349	370	-	-
	Lele27g1786	905	MobiDBLite	consensus disorder prediction	462	482	-	-
	Lele27g1786	905	MobiDBLite	consensus disorder prediction	440	505	-	-
	Lele27g1786	905	SMART	serkin_6	522	815	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele27g1786	905	SUPERFAMILY	Protein kinase-like (PK-like)	517	827	IPR011009	-
	Lele27g1786	905	Pfam	Protein kinase domain	522	815	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele27g1786	905	ProSiteProfiles	Protein kinase domain profile.	522	815	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele27g1786	905	FunFam	serine/threonine-protein kinase mph1 isoform X1	636	818	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele27g1786	Lele-ChrLele27	22947230	22952329	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele27g1786	528	816	MAP Kinase Kinase Kinase	AT4G08470	28.669	2.17e-23	102

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TTK	Lele27g1786		Pkinase	5.7e-56	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele25g0300	25	1790697	1796058	Lele27g1786	27	22947230	22952329	hybridization
	Lele26g0310	26	1826054	1830826	Lele27g1786	27	22947230	22952329	hybridization