Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1760 ATGGGTCGCGTTAAATTGGAGATCAAGAGAATAGATAACACCATAAATCGTCAGGTTACATTCTCAAAGCGCAGAAATGGCCTCATCAAGAAAGCCTACGAGTTATCTATTCTCTGCGACATTGATATTGCTCTTATCATGTTCTCTCCCTCGGGCCGTGTCAGTCACTTTTCCGGCAGAAGAAGAATTGAAGATGTATTCACAAATTACATCAATCTACCAGACCAAGAAAGAGATGGCGCTATAACCTTTCCAGAGCAACCCTACCGCAGGAATATTCAGAACAAAGAGTATCTGCTGAGGACCCTTCAACAACTGAAAAGTGAGAACGACATAGCTCTTCAGCTGGCCAATCCGGGAGACATCAACTCGGAGATTGAAGAACTGCAACAAGAAGTTAGCAGGTTACAGCAACAGCTTCAAATGGCGGAAGAACAGATACGGATATTTGAACCGGAGCCGTTAAAGATGACATCAACGGGGGAGCTGGAATCAAGTGAGAAGCATCTGATGGATACGCTGACACGTGTAATCCAAAGGAAGGAATATCTCATGAGCAAGCACGTATCGTCGTACGACCCATCGGTGATGACGTCGCTGGAGAATGTGGGATGGTTGGGGGAGGGCGGCGACAACCATTCCCACATATTTGACGCTTCGGTGTCTATGGATCCACTGACGTCCGGCGTGTACGAGGCATTCTCGCAGGGAGGCACCAGCTCCAACGGGGAGTGCCACGTGGCCAACGGAAGCGCCGATGCAAATCTGCAGGCCTGGCCCGGCTACACTCTGTATCAGCCCATCCAGGAGGAGATGGTGGGAACAAACATGCAGGAGATGATGCAGCCGCAGCTGAACAATCTGCCGTCCATCCCTAATCAGACTCCCCAATGA 894 0.4955 MGRVKLEIKRIDNTINRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRVSHFSGRRRIEDVFTNYINLPDQERDGAITFPEQPYRRNIQNKEYLLRTLQQLKSENDIALQLANPGDINSEIEELQQEVSRLQQQLQMAEEQIRIFEPEPLKMTSTGELESSEKHLMDTLTRVIQRKEYLMSKHVSSYDPSVMTSLENVGWLGEGGDNHSHIFDASVSMDPLTSGVYEAFSQGGTSSNGECHVANGSADANLQAWPGYTLYQPIQEEMVGTNMQEMMQPQLNNLPSIPNQTPQ 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1760 297 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Lele27g1760 297 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 223 - -
Lele27g1760 297 CDD MADS_MEF2_like 2 58 IPR033896 GO:0000977|GO:0045944
Lele27g1760 297 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Lele27g1760 297 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele27g1760 297 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele27g1760 297 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele27g1760 297 FunFam MADS-box transcription factor 41 13 92 - -
Lele27g1760 297 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele27g1760 297 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele27g1760 297 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele27g1760 297 Coils Coil 126 146 - -
Lele27g1760 297 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1760 Lele-ChrLele27 22768952 22771602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1760 1 295 Type I MADS-box Gene Family AT1G22130 55.696 4.35e-115 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele27g1760 SRF-TF 2.1e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1760 27 22768952 22771602 Lele01g0372 01 2161731 2164339 CCT
Lele27g1760 27 22768952 22771602 Lele02g0367 02 2131943 2136831 CCT
Lele27g1760 27 22768952 22771602 Lele03g0378 03 2181580 2184913 CCT
Lele27g1760 27 22768952 22771602 Lele04g0375 04 2219180 2222284 CCT
Lele25g0327 25 1968936 1971729 Lele27g1760 27 22768952 22771602 hybridization
Lele26g0340 26 2031169 2032701 Lele27g1760 27 22768952 22771602 hybridization