Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1751 ATGATTTTTGGGTTTTGGCTTAGATCTGTGGAAGTTATGGCGGCTACCATGGATTTCTACAGTGGCAGACCACTTCATTCAGATCCTTTCAGGGGTGAGTTGATGGAAGTGCTTGAACCTTTTATGAAAAGTCCTTCCACAACTCCCTCTCCCTCCGCAGCCTCATCCCCTTGCTCAAATTCCTCCCTACCTTCTACATCTTACTCTCATTCTTCTCCCAACTCCTGCCTATCTTCTCCATCAGTCCCTTCACAGCCCAGTTTTCTGGCAGACGGTTGCTCCACATCGATTACCCCTATATTTAACGGTGGGTTATCGAACAGCCTCAACACAATCGGTTTCGGGCAACCGAGCTCCGTTCTTGGGCTCAACAACATAACCCCATCTCAGATTTACCAGATCCAATCCCAGATCCAGCTCCAGAACCATCAAAACCTATGCTGGCAGCAAAATAGTGCCTCTGCCACCCTTGGCTTCTTGAGTCCCAAACCTATTCCCATGAAGCATACGGGTGTGCCTCCCAAACCCACGAAGCTCTACCGAGGTGTCAGGCAGCGTCACTGGGGGAAGTGGGTTGCCGAGATCAGGCTCCCTAAGAACCGCACACGACTCTGGCTCGGCACCTTCGACACCGCCGAGGAAGCCGCCCTTGCCTATGACAAGGCCGCTTACAAGCTCAGAGGTGACTTTGCCAGGCTCAACTTTCCGAACCTGCGCCACCAAGGTTCTTGTGTCGGCGGCGAATTCGGGGAGTACAAGCCACTTCACTCCTCTGTGGACGCCAAGCTTCAAGCGATCTGCGAAAGCTTGGCCGATCTGCAGAAACGGGGCAAGTCAGGGAAGCCGACGGGCTCATCCAAGAGGTCAGGTGGGCGGTCGAAAGCGGGTTCGAAAGATGCTCAGCCGGTGGCCAGCGAAACTGATGTGAAGGTGGAAAGCTCGTCGTCAACGGCGATGACGGAGAGCGAGGCGTCCGGGGGTTCTTCTCCCCTGTCGGATCTGACTTTCGCGGACGTGAGCGAGCCTCAGTGGGATGGGGCTTTGGATAATCTGAATCTGCTGAAGTACCCTTCTTATGAGATTGATTGGGCGTCTCTGTGA 1101 0.5404 MIFGFWLRSVEVMAATMDFYSGRPLHSDPFRGELMEVLEPFMKSPSTTPSPSAASSPCSNSSLPSTSYSHSSPNSCLSSPSVPSQPSFLADGCSTSITPIFNGGLSNSLNTIGFGQPSSVLGLNNITPSQIYQIQSQIQLQNHQNLCWQQNSASATLGFLSPKPIPMKHTGVPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSCVGGEFGEYKPLHSSVDAKLQAICESLADLQKRGKSGKPTGSSKRSGGRSKAGSKDAQPVASETDVKVESSSSTAMTESEASGGSSPLSDLTFADVSEPQWDGALDNLNLLKYPSYEIDWASL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1751 366 MobiDBLite consensus disorder prediction 43 66 - -
Lele27g1751 366 FunFam Ethylene-responsive transcription factor 2 178 237 - -
Lele27g1751 366 MobiDBLite consensus disorder prediction 307 336 - -
Lele27g1751 366 Gene3D AP2/ERF domain 179 237 IPR036955 GO:0003700|GO:0006355
Lele27g1751 366 Pfam AP2 domain 180 228 IPR001471 GO:0003700|GO:0006355
Lele27g1751 366 ProSiteProfiles AP2/ERF domain profile. 179 236 IPR001471 GO:0003700|GO:0006355
Lele27g1751 366 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 366 - -
Lele27g1751 366 MobiDBLite consensus disorder prediction 274 336 - -
Lele27g1751 366 SMART rav1_2 179 242 IPR001471 GO:0003700|GO:0006355
Lele27g1751 366 MobiDBLite consensus disorder prediction 42 66 - -
Lele27g1751 366 CDD AP2 178 238 IPR001471 GO:0003700|GO:0006355
Lele27g1751 366 SUPERFAMILY DNA-binding domain 179 237 IPR016177 GO:0003677
Lele27g1751 366 PRINTS Ethylene responsive element binding protein signature 202 218 IPR001471 GO:0003700|GO:0006355
Lele27g1751 366 PRINTS Ethylene responsive element binding protein signature 180 191 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1751 Lele-ChrLele27 22718103 22719538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1751 13 366 AP2-EREBP Transcription Factor Family AT1G78080 51.913 7.39e-96 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele27g1751 AP2 8.5e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0359 02 2081498 2084832 Lele27g1751 27 22718103 22719538 CCT
Lele25g0334 25 2028599 2029663 Lele27g1751 27 22718103 22719538 hybridization
Lele26g0350 26 2107977 2109005 Lele27g1751 27 22718103 22719538 hybridization