Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1747 ATGACGACCCAGAATGCGATGGCCCCTGATTTGAAATCACAAATTAATGCCGTTATTACGGTGTTGATGTCGATATCCAATTCACCTATGTTGCCCGGAGCTGGAGTCCCTGAATCCATGGCTCTGCTTCGTGAGTTCCTGGGGACATCCCAGAGAAGGCTCATGAAAAGGCTTAAGGACGGAGAAGGCAAGGGAGGAGCTAAGGTTACCTCTTGGGTTGATTCAATGAGAGCTTCCTCTCCGCCCCGTGTCAAATCCACCGTTCATGCTTGTGAAAACTCTGACATTAGTTCTGAGATTCTTCGTCATCCTTCAGCGCTCAACGTGTTTGATCATATAATATATAAAACAAGAGGAAAAAAGATCATAACCTTTCTTGACTACGATGGAACTCTCTCCCCAATTGTTGCAGACCCCGAGAAAGCATTCATGACCGAAAAGATGAGAGAAACAGTGAAGGACATAGCCAGACATTTTCCCACGGCCATTGTGACTGGGAGGTGCATAGACAAGGTATATAACTTTGTAAGACTGGCAGAACTCTACTACGCAGGAAGCCATGGTATGGACATCAAGGGGCCAACGAAGACACGAAACTCTGAGAAAGGTAAACGGGCGGTCCTCTTCCAACCTGCGAATCAGTTCTTGCCCATGATCAACGAGGTGTATAAAATCTTGGTAGGAAAAACAAAGTCAGTTCCGGGGGCTATTGTGGAGAATAACAAGTTTTGCTTGTCCGTGCACTTCCGTTGTGTTGACGAGAAGAGTTGGGGTGCATTGGCAGAGCAAGTAAGATCAGTGCTCAACGATTATCCAAAACTTAGACTTACCCAAGGAAGGAAAGTTCTAGAGATCCGTCCAAACATCAAGTGGGACAAGGGTAAAGCTCTTGAGTTTTTGTTGCGTTCACTCGGATATGGAAATTCCAAAGACGTGTTTCCGATTTACATCGGTGATGACCGAACCGACGAGGATGCTTTTAAGGTTTTACGTAACAGAGGTCAGGGGATTGGGATTTTGGTTTCTAAAGTTCCAAGAGAAACAGAGGCTTCCTACACTCTGCAGGATCCATCAGAAGTTGAGCAGTTTCTACGGCGCTTGGCGGAATGGAAGAGGAGGAGGGTGAATCCAACAAAGCAGTGTAGAGACTTGTAG 1155 0.4615 MTTQNAMAPDLKSQINAVITVLMSISNSPMLPGAGVPESMALLREFLGTSQRRLMKRLKDGEGKGGAKVTSWVDSMRASSPPRVKSTVHACENSDISSEILRHPSALNVFDHIIYKTRGKKIITFLDYDGTLSPIVADPEKAFMTEKMRETVKDIARHFPTAIVTGRCIDKVYNFVRLAELYYAGSHGMDIKGPTKTRNSEKGKRAVLFQPANQFLPMINEVYKILVGKTKSVPGAIVENNKFCLSVHFRCVDEKSWGALAEQVRSVLNDYPKLRLTQGRKVLEIRPNIKWDKGKALEFLLRSLGYGNSKDVFPIYIGDDRTDEDAFKVLRNRGQGIGILVSKVPRETEASYTLQDPSEVEQFLRRLAEWKRRRVNPTKQCRDL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1747 384 Pfam Trehalose-phosphatase 125 358 IPR003337 GO:0003824|GO:0005992
Lele27g1747 384 FunFam Trehalose 6-phosphate phosphatase 212 288 - -
Lele27g1747 384 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 57 375 IPR044651 GO:0004805|GO:0005992
Lele27g1747 384 TIGRFAM T6PP: trehalose-phosphatase 120 368 IPR003337 GO:0003824|GO:0005992
Lele27g1747 384 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 125 332 IPR006379 -
Lele27g1747 384 CDD HAD_TPP 125 360 - -
Lele27g1747 384 FunFam Trehalose 6-phosphate phosphatase 218 376 - -
Lele27g1747 384 SUPERFAMILY HAD-like 125 371 IPR036412 -
Lele27g1747 384 Gene3D - 235 382 IPR023214 -
Lele27g1747 384 Gene3D - 122 208 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1747 Lele-ChrLele27 22700034 22701896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1747 111 369 Trehalose Biosynthesis Gene Families AT1G70290 26.619 3.44e-09 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0368 01 2127940 2140654 Lele27g1747 27 22700034 22701896 CCT
Lele02g0362 02 2098539 2111002 Lele27g1747 27 22700034 22701896 CCT
Lele03g0374 03 2143212 2155455 Lele27g1747 27 22700034 22701896 CCT
Lele04g0370 04 2182864 2195329 Lele27g1747 27 22700034 22701896 CCT
Lele25g0336 25 2045115 2046978 Lele27g1747 27 22700034 22701896 hybridization
Lele26g0353 26 2124665 2126556 Lele27g1747 27 22700034 22701896 hybridization