Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1744 ATGGCAGGGAAGGTCAAAACCGTGGAGGAGAATGATCTGGGCTGTGGTTTTGTGGGGAGGCTATCCCTTCTCAGAAGCTACCTGCTGAGAAAATCATCCGTCCATTCGATATCCTTGAAATCTGCCGACAATGTACAGAGCAAGGAGAGCAAAAAGGATTCCAAAATGCCTCCAAATTATGAATCCAAGGGCGCGCGAAATATCCTCACCAAGTCTCACAAACCAGATTCGGATCAGAAGACGCCCAGAAAGAGCACCTCCGGTCATCAGAACAGTCAGAACCGGAGACCTTCAGATGCTGCTAGAAGCTCAACATCATCCTCTGGTAATTCAACCTACACAAGGAATGACGAGAACAAATTACCGAGGGAGCCCGTCGGAAATTCTCTGGAGCTTGCTAGGATAAGCACTAGTCACCAGCGAGACAACGAGAATAAAGCCACAGTTAACTTGAAACTTACTGGGAATTTGCTTGCAAGCAACAGCCCAAGAATTAGTGTTACAAAGAAAGCGGAATCCGTTCCCAAGAGTAAAGAGTTGAATTCTGTAACTACTTCTCGCAATAACGCCGGGATGGGGAACATCATGAGGAAGAATAGCGATGAACTTGTGCAACTGCGGAGACAGAGGATCCGAGGAGACCCTGAGGTGTTGAAGTCAGAGGGAAATGAAGCCTACAAACAGGGGAAATTCGAAGAAGCTTTGAATCTGTATGACCGAGCCATTCATATTGATTCAAATAAAGCAACTTATCATTGCAATAAGAGTGCGGCTCTAATGGGCTTAGGCCGACTTCCAGAAGCATTGGTCGAATGCGAGGAATCTATTCGCCTGGAACCTTCATATATAAGAGCTCACCACCGTTTGGCAGCGATATATCTAAGACTGGGAGAAGCAGAAAAGGCGATGCACTACAATAATTCAACTCCATATGCGGATTCGGTACTCTCATTCCAATCTCAGACTCTTCAAAATCACCTTCAGAAATGCCTTGAAGCTTGGAAAGTAAATGAGTGGAACGCTATACTAAAGGAAACACAATCTGCAATATCATTATGTGCTGATTCAGCCCCGCAGGTCTATGCCCTACGAACAGAAGCCTTACTGAAGCTCCTGAAACATGAAGAGGCATCTTCTACCTACGAAAAAATGCCCAAATTTGAACTTGACTGCTGTATTAAGATTTTTGGCTTGCCACGTACTGCATACTTGTTGGTAGTAGGCGCTCAAGTTCACTTGGCAGCCGGCAGGTTCGGCGATGCAGTGACAACTGCTCAGCAAGCAGCTGAACTTGATCCAACCAACAAGGAGGTGAACGCAGTGGTAAGAAGAACGAGAGCAGTGAGATCAGCGAGAATGAGTGGGAATTTACTGTTCAAGGCTTCCAAGTTTATGGAAGCATGTGGGGTTTACAATGAAGGGCTAGAACATGATCCATTCAACTCAGTGCTGCTATGCAACAGAGCAGCATGCCGTTCCAAGCGGGGTCAATGCGAGAAAGCAATTGAAGATTGTAACGCAGCCCTTGCAATTCAGCCTTATTACAGCAAGGCAAGATTAAGGAGGGCAGATTGCAATGCTAAGTTGGAAAGATGGGGAGCTGCCATTCAAGACTACGAAATGCTGATGAGAGAAAAGCCAGGGGATGAGGAGGTGGCGAGGGCTTTGTTTGAGGCCCAACTTCAACTCAAGATGCTGCGAGGAGAAGATATTAAAGACTTGAAATTCGGTTCCAATTTGGTTTCCATCTCAAGCAATGATCGCTTTAGACACTATGTGACCTTGCCTGGTATGTCTGTGGTTCTGTTTTGCAACAAGGCAACCCACAAGCAATTATTGCTGGTATTGGAGGAAACATGCAAGAGATTTCCATCTGTTAATTTCCTCAAGGTGGAGATTGAAGACCATCCCTACTTGGCAAAATCAGAAGGCGTGATCTCTGTCCCAGCCTTCAGAATATACAAGAACGGATCAAGGGTCACAGAGATTCCAGGCAACAAACACGAGCTGTTAGAAAGATCTGTTAAACATTATAGTAGCTGA 2043 0.4562 MAGKVKTVEENDLGCGFVGRLSLLRSYLLRKSSVHSISLKSADNVQSKESKKDSKMPPNYESKGARNILTKSHKPDSDQKTPRKSTSGHQNSQNRRPSDAARSSTSSSGNSTYTRNDENKLPREPVGNSLELARISTSHQRDNENKATVNLKLTGNLLASNSPRISVTKKAESVPKSKELNSVTTSRNNAGMGNIMRKNSDELVQLRRQRIRGDPEVLKSEGNEAYKQGKFEEALNLYDRAIHIDSNKATYHCNKSAALMGLGRLPEALVECEESIRLEPSYIRAHHRLAAIYLRLGEAEKAMHYNNSTPYADSVLSFQSQTLQNHLQKCLEAWKVNEWNAILKETQSAISLCADSAPQVYALRTEALLKLLKHEEASSTYEKMPKFELDCCIKIFGLPRTAYLLVVGAQVHLAAGRFGDAVTTAQQAAELDPTNKEVNAVVRRTRAVRSARMSGNLLFKASKFMEACGVYNEGLEHDPFNSVLLCNRAACRSKRGQCEKAIEDCNAALAIQPYYSKARLRRADCNAKLERWGAAIQDYEMLMREKPGDEEVARALFEAQLQLKMLRGEDIKDLKFGSNLVSISSNDRFRHYVTLPGMSVVLFCNKATHKQLLLVLEETCKRFPSVNFLKVEIEDHPYLAKSEGVISVPAFRIYKNGSRVTEIPGNKHELLERSVKHYSS 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1744 680 Gene3D Glutaredoxin 577 679 - -
Lele27g1744 680 ProSiteProfiles TPR repeat profile. 215 248 IPR019734 GO:0005515
Lele27g1744 680 SUPERFAMILY Thioredoxin-like 566 671 IPR036249 -
Lele27g1744 680 MobiDBLite consensus disorder prediction 67 83 - -
Lele27g1744 680 Pfam Tetratricopeptide repeat 409 481 - -
Lele27g1744 680 Pfam Tetratricopeptide repeat 494 549 - -
Lele27g1744 680 Pfam TPR repeat 222 263 - -
Lele27g1744 680 MobiDBLite consensus disorder prediction 45 59 - -
Lele27g1744 680 SUPERFAMILY TPR-like 453 564 IPR011990 GO:0005515
Lele27g1744 680 Gene3D Tetratricopeptide repeat domain 214 567 IPR011990 GO:0005515
Lele27g1744 680 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 33 677 IPR044534 -
Lele27g1744 680 MobiDBLite consensus disorder prediction 40 129 - -
Lele27g1744 680 Pfam Thioredoxin 610 673 IPR013766 -
Lele27g1744 680 CDD TRX_family 589 672 - -
Lele27g1744 680 SUPERFAMILY TPR-like 214 437 IPR011990 GO:0005515
Lele27g1744 680 SMART tpr_5 516 549 IPR019734 GO:0005515
Lele27g1744 680 SMART tpr_5 482 515 IPR019734 GO:0005515
Lele27g1744 680 SMART tpr_5 249 282 IPR019734 GO:0005515
Lele27g1744 680 SMART tpr_5 283 315 IPR019734 GO:0005515
Lele27g1744 680 SMART tpr_5 215 248 IPR019734 GO:0005515
Lele27g1744 680 SMART tpr_5 448 481 IPR019734 GO:0005515
Lele27g1744 680 SMART tpr_5 402 435 IPR019734 GO:0005515
Lele27g1744 680 MobiDBLite consensus disorder prediction 84 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1744 Lele-ChrLele27 22677166 22679679 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0338 25 2066622 2069137 Lele27g1744 27 22677166 22679679 hybridization
Lele26g0355 26 2147070 2149598 Lele27g1744 27 22677166 22679679 hybridization