Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1739 ATGTTCAAGACGTCTGAGAAAAATATGAGCAACGCAGAGAACAACATGAAGAGAGATGAAGTGTTGGGAACGTGGTGGAAGGGATTTCCAAACACATCATATCCCAATCTTCATCATTGCCAGCCTTACAATGAGCATTTGGCGATTAACTCCCCTTTCCCCATAGCTCCATTTCAGGACAGGAAGCATCTAACACCCCACGATCACCACTCAACTAAATTGTTGTTGGACCCCGAGTCATCGGATTTCCATATTTTGAAGAATATCATTGATAATCAAGTGGTTGATCTGGACCTGTCTCGTGATTTCTATAGAATGAATATTATAGACGGACAGGGAAATAGTAACAAAAAAAAGGCACCTGAAGCGGACTCCTACCGATTTGGATTCGACGCTTTTTCTTTCGATATAAATACTCCCGGCGTTAATGAAACACGGAGCTCCTATGAATATTTTTGCAATGAAGTTCCCGCACCTAATTATGAGTGTCTCTCATCGTCTATTTGGGGTGTTTCACCGAGTCTGGTCGCTGATACGAAGTGGGCTAACCATACCTCGGAGAAAGGATACACTTCTTCCCTCGCACATGGTCTGCCCAGTGCTTTGAATTTGTGCTCTGATTGGAACGTGAACCAAACATATCGTCAATTGGAGCACAGCAAGAAACAGGGGAGCAGTAGCTATGATGGAGAAGTTCAACTGCAGAAGCCATCTATCATCAACCCCTTCCTTTGTCATGGTTTAACTAGCTCACAACTTTGTGGAGTGGATTATGATGGAAGCAGGAGTGTCGAAAACCCCTTAAGATTCTCTCAAATTATGCACCCCAAGCTAGCTTCAATTCAGGATGCAAACGAAAAAACAAGGGGAATTACTAACTTTGAGCTGCCTGAATTTCTCTCGTCCAAAAGAGCTGGTGGCGATCCAGTGGCGTTTCGATGTGATAATAGTTTTATCATACAAGGAAAAGATATAAATTATGGCATAGACAAAGGATACAATTCTTTGAGGGTTAACAAAAAGAATTCCCTCAATGAGAGTGCATTTGCAACTGCCGGGGAGAAAGCTTCTAAACACAATTCTTATACTCCTGGAAGTCAAATTTGTGGGAATAATGGCAGTTTTGTTGGCGATTATCCACTGCCCTCACTACTGAATTTCTATTCTTTGCTGAGTGCCAAGAAGTTGCAGGATGTGTGTAGAGAAGAACAGAAATTGCAGATTGTTGCCAGGGTGACTAAAGAACCAGGGCAACTCGTTATAGTATCTTTAAACACGAATGGCACACGGGTCATACAGAAGTTCATTGAGACACTCAACTCTAGGAAACAAATTTCATTAGTGAAGTCAGCCCTTCAAGCAGGTTTTCTTGATCTTATTAAGGATCTGAATGGAAATCATGTGATACAACGTTGCTTGCAATGCCTTAGCTGTCAAGAGAATGAGTATATAATAGAGATGGAGATCCCAACTGCCTCAACCAATCTGATTTCTCAGTTCAAAGGGAACTATGTAAATCTGTCCACGAAAAAATTTAGCAGTAATATGGTTGAAAGATGCCTTAAGCATGTTCCTGATAGCAGATCAAGGATCGTCCAAGAAATGCTGCCTTCACCTCACTTCGAACAGTTGTTGCGAGATCCATATGCCAATTATGTCATTCAGTCTGCTCTAACACTGACAAAGGGTTCACTTCATACATCTTTGGTTGAAGCAGTTCTTCCTCACAAAATCTTGCGCACCAGCCCGTATTGCAAGAGGATTTTCTCGGGAAATCTACTCAAGAAGTAA 1791 0.4182 MFKTSEKNMSNAENNMKRDEVLGTWWKGFPNTSYPNLHHCQPYNEHLAINSPFPIAPFQDRKHLTPHDHHSTKLLLDPESSDFHILKNIIDNQVVDLDLSRDFYRMNIIDGQGNSNKKKAPEADSYRFGFDAFSFDINTPGVNETRSSYEYFCNEVPAPNYECLSSSIWGVSPSLVADTKWANHTSEKGYTSSLAHGLPSALNLCSDWNVNQTYRQLEHSKKQGSSSYDGEVQLQKPSIINPFLCHGLTSSQLCGVDYDGSRSVENPLRFSQIMHPKLASIQDANEKTRGITNFELPEFLSSKRAGGDPVAFRCDNSFIIQGKDINYGIDKGYNSLRVNKKNSLNESAFATAGEKASKHNSYTPGSQICGNNGSFVGDYPLPSLLNFYSLLSAKKLQDVCREEQKLQIVARVTKEPGQLVIVSLNTNGTRVIQKFIETLNSRKQISLVKSALQAGFLDLIKDLNGNHVIQRCLQCLSCQENEYIIEMEIPTASTNLISQFKGNYVNLSTKKFSSNMVERCLKHVPDSRSRIVQEMLPSPHFEQLLRDPYANYVIQSALTLTKGSLHTSLVEAVLPHKILRTSPYCKRIFSGNLLKK 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1739 596 ProSiteProfiles Pumilio RNA-binding repeat profile. 534 571 IPR001313 GO:0003723
Lele27g1739 596 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 314 596 IPR033133 GO:0003723
Lele27g1739 596 SMART pum_5 451 486 IPR001313 GO:0003723
Lele27g1739 596 SMART pum_5 499 533 IPR001313 GO:0003723
Lele27g1739 596 SMART pum_5 414 449 IPR001313 GO:0003723
Lele27g1739 596 SMART pum_5 536 571 IPR001313 GO:0003723
Lele27g1739 596 Gene3D - 392 485 IPR011989 -
Lele27g1739 596 Pfam Pumilio-family RNA binding repeat 503 535 IPR001313 GO:0003723
Lele27g1739 596 Pfam Pumilio-family RNA binding repeat 456 486 IPR001313 GO:0003723
Lele27g1739 596 Pfam Pumilio-family RNA binding repeat 419 442 IPR001313 GO:0003723
Lele27g1739 596 Pfam Pumilio-family RNA binding repeat 542 558 IPR001313 GO:0003723
Lele27g1739 596 SUPERFAMILY ARM repeat 393 589 IPR016024 -
Lele27g1739 596 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 483 589 - -
Lele27g1739 596 ProSiteProfiles Pumilio RNA-binding repeat profile. 411 449 IPR001313 GO:0003723
Lele27g1739 596 Gene3D - 486 591 IPR011989 -
Lele27g1739 596 ProSiteProfiles Pumilio RNA-binding repeat profile. 451 486 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1739 Lele-ChrLele27 22646434 22651326 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0374 01 2170894 2175718 Lele27g1739 27 22646434 22651326 CCT
Lele02g0369 02 2143236 2150210 Lele27g1739 27 22646434 22651326 CCT
Lele03g0380 03 2192833 2203776 Lele27g1739 27 22646434 22651326 CCT
Lele04g0377 04 2228733 2239314 Lele27g1739 27 22646434 22651326 CCT
Lele25g0342 25 2089314 2094486 Lele27g1739 27 22646434 22651326 hybridization
Lele26g0360 26 2171766 2176224 Lele27g1739 27 22646434 22651326 hybridization