Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1737 ATGACAGGCATGGAGTACTTAATATTCTTGAAATATGGGTCAATTAATGAATCCTCGGGCGAATTCATTTCTCTCGCGGTGAATGTTATCAGCGGCGGTTCCCTTCCTCATTCCGTCCCTAAAACCCTAGCAAAGTCGGGCGCAATCGCCGCCCCTCTCCCACTCCACGTTTCAGCCCCAAATATGTCGCACTTTGGAAGATCTGGTCCTCCGGACATCAGAGACACCTATTCCCTTCTCGTCCTCAATATTACTTTCCGTACCAGCGCTGACGATCTCTACCCCCTTTTTGACAAGTACGGCAAGGTTGTCGATGTCTTCATCCCCAGAGACCGAAGGACTGGCGAATCACGAGGCTTCGCTTTTGTTCGTTATAAGTACGCCGACGAGGCTCAGAAGGCAGTAGATAAGCTTGATGGAAGAGTGGTCGATGGAAGAGAAATTATGGTTCAATTCGCAAAATACGGACCTAATGCTGAGAAAATCCAAAAGGGCAGGATAGCGGAAACATCCTCCAAGCCAAGAGGGAGGTCAAGAAGCCGCAGCCCTCGTCCTAGGCATAGGGATGAATATAGAGACAGGGACTACAGGAGGAGAAGTCGCAGTAGAAGTAGGGAAAGATATGATCGTGACAAGTACCGTGAAAGGGATAGGGATTATCGTCACAGGAGTAGGAGCCGCAGTGCAAGTCCTGATCGGCATAAAGAACGAAGGAGAGGAAGAGATGACAAGGAGAGAAGAACCCGAAGCAGATCAGTTGATAGTGCATCGCCTGCTCGGCATGGCTCCAGTCCTCGTAGAAGTCCATCTCCCCACAGGAGGTCGTCTCGAGATGAGCGGCATGATGAACAGAATAGTCGTGAGCAATCACCTGCTCAGAAGGATGTTTCACCACATGATCGTCCTATTGATTCTCGAAGCCCATCTCACAAATCTGATGCTGATGAATGA 951 0.4953 MTGMEYLIFLKYGSINESSGEFISLAVNVISGGSLPHSVPKTLAKSGAIAAPLPLHVSAPNMSHFGRSGPPDIRDTYSLLVLNITFRTSADDLYPLFDKYGKVVDVFIPRDRRTGESRGFAFVRYKYADEAQKAVDKLDGRVVDGREIMVQFAKYGPNAEKIQKGRIAETSSKPRGRSRSRSPRPRHRDEYRDRDYRRRSRSRSRERYDRDKYRERDRDYRHRSRSRSASPDRHKERRRGRDDKERRTRSRSVDSASPARHGSSPRRSPSPHRRSSRDERHDEQNSREQSPAQKDVSPHDRPIDSRSPSHKSDADE 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1737 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 155 IPR000504 GO:0003723
Lele27g1737 316 SUPERFAMILY RNA-binding domain, RBD 61 163 IPR035979 GO:0003676
Lele27g1737 316 Gene3D - 59 167 IPR012677 -
Lele27g1737 316 MobiDBLite consensus disorder prediction 271 316 - -
Lele27g1737 316 FunFam Serine/arginine-rich splicing factor SC35 65 164 - -
Lele27g1737 316 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 75 297 - -
Lele27g1737 316 MobiDBLite consensus disorder prediction 183 254 - -
Lele27g1737 316 MobiDBLite consensus disorder prediction 161 316 - -
Lele27g1737 316 SMART rrm1_1 78 151 IPR000504 GO:0003723
Lele27g1737 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 148 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1737 Lele-ChrLele27 22639817 22643683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1737 75 153 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 2.94e-10 58.5