Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1729 ATGGCTGATTATTCACTCTCAGTTAGAGTTGACTCCCCACCACCTAAGTTTGGAGTATCTTTCGAAAAAACTATGAGAGAAGCAAAGTACCTGGACGACATCCAAAGAAGTGCCCAAGAGGCTGATGAAGAACCCTCTCCAAATAGTTTCCAAAAGGGTCTTGCAGAGCTCGTGGGTACTTATGTTCTTATATTTGTGGGATGTGGGGCTGGTCTGGCCAGTAACGTGGAGCAGCTTAACATAGTAGGAGTAGCAATTGCAGCGGGTCTTTCTTTGACGGTGGCTATTTATTCAGTTGGTCATATTTCCGGTGGCCACTTCAATCCTGCAGTCTCTATAGCCGCCGCTGTTGCTCGCAAGCTTCCATTCAAACATGTGCCTATTTACGTGCTGTGCCAGCTGATGGGTGCTATACTGGCAAGCCTTACCCTCAAGGTGTTGTATGAGGGGCAGGCAGACATTAGGGTGGTGGTGACTCAGTACTCTAGTTCAACGAGTCATCTAGAGGCTATCGCATGGGAGTTCATAGCCACTTTCATACTTATGTTCACCATTTGTGGTGTTGCCACTGATCACAGAGGGAGCAAAGACCTCGCTGGACTTGCAATAGGCACGGCAGTTCTAATCAACGTCATCGCTGTTGGGCCTATTACTGGAGCTTCCATGAATCCTGCTAGGAGTTTGGGCCCAGCCATTGTCTCTGGCGTCTTCAAAAATATTTGGATCTATATCATTAGCCCTATCATGGGAGCCACCACTGCGAGTCTGGTTTACAGCCTCCTTAGAGTACCCAAACCGGATCAACGCCTGAGGATCGCGCCAAAATAA 828 0.4819 MADYSLSVRVDSPPPKFGVSFEKTMREAKYLDDIQRSAQEADEEPSPNSFQKGLAELVGTYVLIFVGCGAGLASNVEQLNIVGVAIAAGLSLTVAIYSVGHISGGHFNPAVSIAAAVARKLPFKHVPIYVLCQLMGAILASLTLKVLYEGQADIRVVVTQYSSSTSHLEAIAWEFIATFILMFTICGVATDHRGSKDLAGLAIGTAVLINVIAVGPITGASMNPARSLGPAIVSGVFKNIWIYIISPIMGATTASLVYSLLRVPKPDQRLRIAPK 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1729 275 Gene3D Glycerol uptake facilitator protein. 20 269 IPR023271 -
Lele27g1729 275 Pfam Major intrinsic protein 47 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele27g1729 275 SUPERFAMILY Aquaporin-like 47 268 IPR023271 -
Lele27g1729 275 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Lele27g1729 275 PANTHER AQUAPORIN NIP2-1 33 265 IPR034294 -
Lele27g1729 275 CDD MIP 51 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele27g1729 275 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele27g1729 275 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele27g1729 275 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele27g1729 275 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele27g1729 275 PRINTS Major intrinsic protein family signature 241 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele27g1729 275 PRINTS Major intrinsic protein family signature 204 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele27g1729 275 TIGRFAM MIP: MIP family channel proteins 55 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1729 Lele-ChrLele27 22585980 22587233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1729 51 271 Major Intrinsic Protein MIP AT5G37810 45.536 1.92e-63 199