Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1712 ATGGATCTTCCTCAAGATACAGATCTTTATCTCAAAGAATCCATCGACGACTCCTTGGGTCTTCCGATTTCGTTGCGGACTTTAGAATCCAAACTTCGAGCCTCCGAAGAGTCGCAATGGCTACTACGCCAGCAGCGCCTTTCTCTACTCTTCAAATTAAAAGAGAAAGATAAAATGATTGACCGCATTAAGTCTGAAGCGACTATGAACGCTCAAGCTCTGAAGAAGTTCGTTGAGGAGAATCAGAAATTGGCTTCCGAGTGTCAGAATCTGTTAGGTCAATGTCATAAATGGGAAAGAGAATGCTCGCTTTATGATCGCGACAGGGAAGCGTTGATGGAATTTGGAAACGAAGCCGATGAACGAGCAAAAGAGGCAGAGTTCCGTGCACAACAGTTGGAAGAGGAGTTGGGAAAGTTATTGCAAGAATCGCAGTACTACAAGCATGAGTACAATATGCGACCGGATGGTGCATCTTCTAATAGCACAGCAGTGGAAGAGAATTTACTTGACGCCCTTTTGTCTAAGGTTACAAATAAAGATGCTGCTTCTGCGTATACGTTCTTGGAGGCAAACAGTGGAACTGAAGCCTGTAAGAAGTTGTTAACAATGTGGAACTGTCTGTTAATTGATATTTATAAACTTATATTACATGGTGGTAGCCTAAATCCATCAACGCGGAAAGTTTTGTCCCTTGTTGCTGAAGTGAAGTCACTTGAGAAAGATAAGGAGCATCTCAGGATTAACCTTGACAGAGCTGAGGAGGAGGTCAAATTACTGTCTGACGAAAATAACATATTGAACAAGGAGAACAAAAGACTACTGAAGCTAAAGGAAAGGAACCATGTTGGTTCTGGTGGGAAACATAGCAGCAGTGCATCTGCCAAGGACCAAGTGGACCTATCCCTAACAACTCCAACCCCTACCCTGCACATATATAAGCAAAAGCATTCTTTCTACCACACTGTCTCAAAGCCACAGAGCCTCCTCTGTTCCCTTCTCTCTCACACAATGGCACTCTCCAACGTCTTCATTCTCTGTGTATTCGTCGGAATCAACATGGCCCTGCCGGCGCTGGCCAAGGTCTACAACGTTGGAGACTCCTCTGGTTGGGCCATCGGTGCTGATTATGGCAGCTGGGCTAGTGGAAAAACCTTCCAAGTCGGCGATTCTCTCGTGTTTAACTATGGAGCGGGCCACACAGTGGATGAAGTTAAAGAGAGTGACTACAAATCCTGCACTACCGGCAATTCACTTTCTACAGACAGCAGCGGAGCCACCACCATTGCCCTCAAGACCGCCGGCACTCACTACTTCGTATGTGCTGTTCCTGGACATTGCAGTGGTGGCATGAAGCTCTCTGTTGATGTTAAGACCGGAAAAGCCTCCGCTCCCTCTGCAACGCCTTCCTCCGGGAAGGGTTCGCCTGCCAGTGATACCCCCACCACCCCGTCCTCCTCTTCCTCCACCACCACCACTCCATCCTCTACGGCATCGTCTTCTTCGGCCGCTAGCCTTTCGCCGGTTGTCTCTATGCTGACTGTTTTTTGGGTTTCATACTGGGCGTTGCGCCTGCTATGA 1581 0.475 MDLPQDTDLYLKESIDDSLGLPISLRTLESKLRASEESQWLLRQQRLSLLFKLKEKDKMIDRIKSEATMNAQALKKFVEENQKLASECQNLLGQCHKWERECSLYDRDREALMEFGNEADERAKEAEFRAQQLEEELGKLLQESQYYKHEYNMRPDGASSNSTAVEENLLDALLSKVTNKDAASAYTFLEANSGTEACKKLLTMWNCLLIDIYKLILHGGSLNPSTRKVLSLVAEVKSLEKDKEHLRINLDRAEEEVKLLSDENNILNKENKRLLKLKERNHVGSGGKHSSSASAKDQVDLSLTTPTPTLHIYKQKHSFYHTVSKPQSLLCSLLSHTMALSNVFILCVFVGINMALPALAKVYNVGDSSGWAIGADYGSWASGKTFQVGDSLVFNYGAGHTVDEVKESDYKSCTTGNSLSTDSSGATTIALKTAGTHYFVCAVPGHCSGGMKLSVDVKTGKASAPSATPSSGKGSPASDTPTTPSSSSSTTTTPSSTASSSSAASLSPVVSMLTVFWVSYWALRLL 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1712 526 SUPERFAMILY Cupredoxins 360 457 IPR008972 -
Lele27g1712 526 MobiDBLite consensus disorder prediction 461 502 - -
Lele27g1712 526 ProSitePatterns Type-1 copper (blue) proteins signature. 435 451 IPR028871 -
Lele27g1712 526 Coils Coil 229 280 - -
Lele27g1712 526 Coils Coil 116 150 - -
Lele27g1712 526 PANTHER EARLY ENDOSOME ANTIGEN 1 301 - -
Lele27g1712 526 Pfam Plastocyanin-like domain 371 451 IPR003245 GO:0009055
Lele27g1712 526 FunFam Blue copper 359 463 - -
Lele27g1712 526 CDD Phytocyanin 361 457 - -
Lele27g1712 526 Gene3D - 359 464 IPR008972 -
Lele27g1712 526 Coils Coil 74 101 - -
Lele27g1712 526 ProSiteProfiles Phytocyanin domain profile. 361 459 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1712 Lele-ChrLele27 22447859 22453014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1712 371 459 Miscellaneous Gene Families AT1G22480 65.169 9.18e-34 124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1712 27 22447859 22453014 Lele02g0417 02 2416280 2417444 CCT
Lele27g1712 27 22447859 22453014 Lele04g0425 04 2518355 2519519 CCT
Lele01g0401 01 2359184 2363065 Lele27g1712 27 22447859 22453014 CCT
Lele02g0399 02 2337143 2340631 Lele27g1712 27 22447859 22453014 CCT
Lele03g0412 03 2365211 2369117 Lele27g1712 27 22447859 22453014 CCT
Lele04g0407 04 2425713 2430601 Lele27g1712 27 22447859 22453014 CCT
Lele25g0373 25 2273032 2273647 Lele27g1712 27 22447859 22453014 hybridization