Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1708 ATGGCCAGAATCCTCAGGAAACTCTTCCCAGCACTATCCAATATAAACCAAACACAAAATTGTCCTGAATTTTGCGACACAGCTTGCCCTTACAGCTGCTATTCTTTCCCAGATTACTACTTCCCGCCACCGCCGCCGCCTCCTTTCTCTGCCACTGATCATTCCAGTTCAGGCACTCATATCTCCTCCTATTTCATCATTCTTGCTTCTTTGTTCTCTGTCATTTTCATTCTCCTCGGCTTATACGTGATCAAAACCAAGTGTTACGCTAGTTGGTGTGGCTGGAGACACAATAGATCCCAATTAGAGACCTCAGACCAAGAGTTTCTTGACGAGAACCAAGTTGATCACCCTGTCTGGTTTATCACCACCGCCGGTCTGCAACAGTCGATTATAAACTCCATCACAGTTTGTAGGTATAAAAGGGGTGATGGGTTGATCGAAGGAACCGAGTGTTCAGTGTGTTTGAACGAATTTCGGGAAGATGAAACCTTGAGGCTCTTGCCCAAATGCAGCCATGCCTTTCACATATCCTGTATTGACACTTGGTTGCGTTCTCATACCAATTGTCCTCTCTGTCGTGCTGGGATAGTCATGAACAATGTCAGACCTGAGGCTGCAGTGTCAAATTTGGCTTTAACGGAGCTAAACTCTGACAATTTACGTAGGAACCAAGAGATTCAAACTGAGAATTCGCCAAATGATGATGAAGTAAACAACAGTGAGCTGGTAATTGCAAATGGGGCATCTGGAAACAGAGCTGGAACAGTGGCAATCCAAGAATTGAACGGTAATTTGGTTTCAAAGGAGCACGCGAATGTTGTACTCAATGGTGCAAAAGAGGATCATGGGGTTTTGAATGAAGGGAAGCGAATTGAGATAAGGTCTATGTCTATGGATTCTAGACTGGCAAATTCTTCTGCTTCGGAACATGAAGAAATCCATCCAATTTTTGGAGGAATTCGGCGTTCCTCTGTTTCAAAATGTCTGCACCTGAGCCCTGTTCCTATGAAGAGGTCGTTCTCTTGCAGTGGAAGGATTCTATCTGCCAGGGGTCACAGGAATCTACATATAAGTCTTCCTTATTAG 1089 0.4444 MARILRKLFPALSNINQTQNCPEFCDTACPYSCYSFPDYYFPPPPPPPFSATDHSSSGTHISSYFIILASLFSVIFILLGLYVIKTKCYASWCGWRHNRSQLETSDQEFLDENQVDHPVWFITTAGLQQSIINSITVCRYKRGDGLIEGTECSVCLNEFREDETLRLLPKCSHAFHISCIDTWLRSHTNCPLCRAGIVMNNVRPEAAVSNLALTELNSDNLRRNQEIQTENSPNDDEVNNSELVIANGASGNRAGTVAIQELNGNLVSKEHANVVLNGAKEDHGVLNEGKRIEIRSMSMDSRLANSSASEHEEIHPIFGGIRRSSVSKCLHLSPVPMKRSFSCSGRILSARGHRNLHISLPY 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1708 362 SMART ring_2 152 193 IPR001841 -
Lele27g1708 362 PANTHER RING-H2 FINGER PROTEIN ATL16 48 342 IPR044600 GO:0016567|GO:0016740
Lele27g1708 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 201 IPR013083 -
Lele27g1708 362 CDD RING-H2_EL5_like 151 194 - -
Lele27g1708 362 FunFam RING-H2 finger protein ATL54 127 200 - -
Lele27g1708 362 SUPERFAMILY RING/U-box 146 200 - -
Lele27g1708 362 Pfam Ring finger domain 151 194 IPR001841 -
Lele27g1708 362 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1708 Lele-ChrLele27 22436405 22437493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1708 1 202 C3H Transcription Factor Family AT1G72220 50.661 1.18e-61 201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0375 25 2284606 2285790 Lele27g1708 27 22436405 22437493 hybridization
Lele26g0390 26 2353657 2354739 Lele27g1708 27 22436405 22437493 hybridization