Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1693 ATGGAATTTGAGGAGCACGACGAGCAGGACGACGACGTCCAGATCCCGGCGTCGCCTCCTCCTGCTTATTATGATTCCCTCCCCAACAACTCTGTCCCCAGGTCCAAAATAAGCTTCTCCGGAGGAGGAGGAGGAGGAGAGGGTGGCGCCTCAGCCGTCACGCCTGGCCGTAAAGCTGAGCCCTCAGTGACGGCCAGGTACCGGGAATGCCAAAAGAACCACGCGGTAAGCCTCGGCGCACACGCGGTCGACGGCTGCGGAGAGTTCATCGCGGCGGGAGAGGAAGGCACGCTCGACGCGCTAAAATGCGCCGCCTGTAACTGTCACCGCAATTTCCACCGTAAGGAGACAGACGGCGGGGACATGACGCCGTATCCGCTGCCGCCGCCGCATTACCAGTACCACCAGCAGCATCCACCATACTACCGTGCGCCTCCGCCACCAGCTGGGTACCTGCACCATCACCTGACGGCTCAGCCGGTGGCGCTGCAGCGGTCGTTGGCTCTGCCAGCTCCGGCACCGATTAGAGATGAAGAGGACATGTCAAATCCGAGCAGCAGCGGAGGCGGCGGCAGTGGAGGTGGGGGAGGGAAGAAAAGGCACAGGACGAAGTTCACGCAGGAGCAGAAGGATAAGATGCTGGCATTCGCGGAGCGTGTCGGGTGGAGAATCCAGAAGCATGATGAAGCTGCGGTGGAGCAATTCTGTGCGGAGACCTGTGTCAAGAGACATGTACTTAAGGTTTGGATGCACAATAACAAGAGCATTCTTGAAGCAGTTCTAAAACTTGCTTCTAGTTCTCTGACATCTGTCATCTTTCTCACCAACTTACAGCTTTACTCCTTTCTTTTTCATTGTGGCAATGATTTGGGGGTTCTTGTGGGTGCGAACGTAACTGAAAAAACACGAACTATTTTAAAGAGAAATCTGATCCAAGAGTGA 942 0.5605 MEFEEHDEQDDDVQIPASPPPAYYDSLPNNSVPRSKISFSGGGGGGEGGASAVTPGRKAEPSVTARYRECQKNHAVSLGAHAVDGCGEFIAAGEEGTLDALKCAACNCHRNFHRKETDGGDMTPYPLPPPHYQYHQQHPPYYRAPPPPAGYLHHHLTAQPVALQRSLALPAPAPIRDEEDMSNPSSSGGGGSGGGGGKKRHRTKFTQEQKDKMLAFAERVGWRIQKHDEAAVEQFCAETCVKRHVLKVWMHNNKSILEAVLKLASSSLTSVIFLTNLQLYSFLFHCGNDLGVLVGANVTEKTRTILKRNLIQE 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1693 313 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 198 254 IPR006455 -
Lele27g1693 313 Pfam ZF-HD protein dimerisation region 65 117 IPR006456 -
Lele27g1693 313 MobiDBLite consensus disorder prediction 1 60 - -
Lele27g1693 313 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 116 IPR006456 -
Lele27g1693 313 FunFam Zinc-finger homeodomain protein 2 187 259 - -
Lele27g1693 313 SUPERFAMILY Homeodomain-like 185 254 IPR009057 -
Lele27g1693 313 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 66 116 IPR006456 -
Lele27g1693 313 Gene3D - 183 258 - -
Lele27g1693 313 MobiDBLite consensus disorder prediction 174 205 - -
Lele27g1693 313 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 55 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1693 Lele-ChrLele27 22331771 22333176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1693 1 271 ZF-HD Transcription Factor Family AT4G24660 47.445 2.63e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele27g1693 ZF-HD_dimer 8e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0391 25 2368538 2370330 Lele27g1693 27 22331771 22333176 hybridization
Lele26g0403 26 2442365 2443882 Lele27g1693 27 22331771 22333176 hybridization