Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1674 ATGGGTGGTGCCCTCTCTTTCAACCCATTCACCAGATTTTTCTTATTCTTCTTCCTCTTCCACACCACAATCATACTCCTTCCAGGGCCTGCTGCTGCTGAAATCCCATCTTCTCCTTTAGCTCTGACCGTTGATGACAACGGCGCGGGAAAAAATCCGCCTCCTCCTCCTCCGCCGCCGCCTCCGCCGCCGCCGGGAAGTCAACGTGGCGGAGGAGGGAGAGGGTCTCCTTTTAAGCCGAGCGTGGTAGTTCTAATTGGGGTATTGACGACCCTGTTTTTTCTTACTTTTCTCCTTCTTCTCTATGTTAAACACTATAAACCAGAGGAGGAGCCCCTGAGGAATTCACGTACAAGCGCGGGCGGCTATTCGGGGAGGAAGAACTCCGGCATTGACCGGGCGGTGATCGAGTCGTTACCCATTTTTAGATTCGGATCGTTAAGTGGCCAAAAGGAGGGGCTGGAATGCGCCGTTTGCCTGACCCGGTTTGAGACCGTGGAGGTTCTTCGGTTGCTTCCAAAATGCAAGCACGCCTTCCACGTCGAATGTGTGGATACGTGGTTGGACGCGCATTCCACTTGTCCGCTTTGCCGGTACCGGGTCGACCCAGAAGACATTCTCCTGGTTGGGGATGCTAAAGTTTGGCCGCAGAATCACCCCATTCCACCGATACAAGAGATCTCCGAAAATCCGCAGCAGTGTACAGACATAGAGAGTGGCCTGGGACCGGATTCACAGAATAGGTCGGATTCAAACTCGATTCTCCGTCGAGTCTCCGGGAGGCACTCATCCGTAGGGGAAAGAGGAGGAGCGGGTAGTAGTGGGTTCTTAAGGATCATATTGCAGCATCGAATCAGCGTGGACGGCGAATCGACGACGACTCCGCGGCAGAAGAAAACGGCGCATGTTAGGATGTCACTGGACAGTGCAATGGCGACGAAGAGGAAAAGAAACGAGACCGGAAAAGAAAGATCAGAAGGTAGTGAGTGTGATGGTCAAAGAAAAGACGGGTTACTGCTGACGGAGAAGGAGAAGAAGCACAGGCTAGAACACAGGATCATAGTTTCTCCGGCTCAAAAGCCCAATGTGCTTCATCAGAGATGGAGCGACGTACAGCCGTCGGACTTACTCTACCTGACGTCGGAGATGATACTGAGCGAATCGTGTTCCTCATCGGGGCCGTCGCTTTCAGGGCGGCAGCAGCAGCAACAGAATATGCAGCTGCCAACGTACCGGAGCAGAGGAGAGAACCGTACGGAGGCAATAAATGTGAGAAGCTTGTCGGAAATCACGGGATTGAGCCGAAGTAGGAGTGAGGAAAGAGAGCACCGTCGGGCAGAGGAAGAAGAGAGACAAGCGGGAGTAGTATCGAGATGGCTGGCCTGGATCTCTCAGTCGCAACGATCTGTACGGTAG 1416 0.5346 MGGALSFNPFTRFFLFFFLFHTTIILLPGPAAAEIPSSPLALTVDDNGAGKNPPPPPPPPPPPPPGSQRGGGGRGSPFKPSVVVLIGVLTTLFFLTFLLLLYVKHYKPEEEPLRNSRTSAGGYSGRKNSGIDRAVIESLPIFRFGSLSGQKEGLECAVCLTRFETVEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVGDAKVWPQNHPIPPIQEISENPQQCTDIESGLGPDSQNRSDSNSILRRVSGRHSSVGERGGAGSSGFLRIILQHRISVDGESTTTPRQKKTAHVRMSLDSAMATKRKRNETGKERSEGSECDGQRKDGLLLTEKEKKHRLEHRIIVSPAQKPNVLHQRWSDVQPSDLLYLTSEMILSESCSSSGPSLSGRQQQQQNMQLPTYRSRGENRTEAINVRSLSEITGLSRSRSEEREHRRAEEEERQAGVVSRWLAWISQSQRSVR 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1674 471 MobiDBLite consensus disorder prediction 220 270 - -
Lele27g1674 471 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 58 466 - -
Lele27g1674 471 MobiDBLite consensus disorder prediction 434 453 - -
Lele27g1674 471 FunFam RING-H2 finger protein ATL43 131 205 - -
Lele27g1674 471 SUPERFAMILY Formin homology 2 domain (FH2 domain) 54 64 - -
Lele27g1674 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 205 IPR013083 -
Lele27g1674 471 MobiDBLite consensus disorder prediction 295 336 - -
Lele27g1674 471 SUPERFAMILY RING/U-box 135 203 - -
Lele27g1674 471 Pfam Ring finger domain 155 198 IPR001841 -
Lele27g1674 471 MobiDBLite consensus disorder prediction 389 433 - -
Lele27g1674 471 MobiDBLite consensus disorder prediction 223 259 - -
Lele27g1674 471 ProSiteProfiles Zinc finger RING-type profile. 156 198 IPR001841 -
Lele27g1674 471 CDD RING-H2_EL5_like 155 198 - -
Lele27g1674 471 MobiDBLite consensus disorder prediction 389 453 - -
Lele27g1674 471 MobiDBLite consensus disorder prediction 288 336 - -
Lele27g1674 471 MobiDBLite consensus disorder prediction 50 68 - -
Lele27g1674 471 MobiDBLite consensus disorder prediction 42 75 - -
Lele27g1674 471 SMART ring_2 156 197 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1674 Lele-ChrLele27 22203317 22204732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1674 76 462 C3H Transcription Factor Family AT5G05810 45.060 1.04e-84 265