Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1673 ATGGAATGGAGGAGCTTCGATGATCATGGATGCTATCAATGGGTCGAAAGGCTGAGGTGTGGAGACGGAGGAATCGGCTCGTGGATGGTGGAGGATAAGTGGTCGAATAAGCAGCTGGATCTCCCTATGGAGAAAGCAGAAGAAGCTGAACGTTTGCTTGGGGTCGCTGAAAAGCTCTTATTCGATCGGGATCTTACCGGCTCAAGAGAATTTGCCATTTTGGCCCAGGAAACCGAACCTCTTCTTGAGGGTTCCGACCAAATCCTGGCCGTCGTCGACGTCCTCCTCGCCGCTGATGACCGACTAAACAACCACCACGATTGGTACGCCATTCTTCAAGTTGATCGCCGATCGGACGACATAGATCTCATCAAGAAGCAATATCGGAGGCTCGCACTTCTCCTCCACCCCGACAAGAACAGGTTCTCCCACGCTGATCATGCATTCAAGCTCGTCTCCGAGGCATGGGATACTCTATCGGATCCCGCCAAAAAGTCGCTCTACGACAAGGAGCTCGGTCCCTTCTCTATGGTTGATTTGAGCGCGCCCAGGTGGGCTCATCAAGAAAAATTGCCGGTCCGAAGAGCAGGAGCGGGGTCCGGTGGTGGTGGGAACCAGGGGTTTGATTTCAGGAATAATGGCACCGCCACTAGGGACGCTGGGGCCGATGAGAATTCACGACGGAGTCCGTCGACCTTCTGGACGGCCTGCCCGTACTGTTATTTGCTGTGCGAGTATGATAAAATTTACGAGGGATGCTGTCTAAGGTGCCAGAACTGTGAAAGATCATTCCATGGGGTTTCCATTCCGACTTTGCCGCCTCTTTTGGCAGGCCAGGAGGCCTATTATTGTTGCTGGGGATTCTTTCCATTAACCTTAGCCACTGCTAATTCCGCCGGCAAAGACGCTGCGACTCCTTCAGGATTTCCAAATTGGACGCCCATGGCATCTGAATCTGGCCGGCAATCAGAGAATGGTTGGAATAATGCAGAACCCGTGGTGGCCACAAAGCCTGTGGCAAAGACGGCGAGGGCCGGGGGTGTTTCTAATGGGATATCTTCAGGTTCGGGATCTAGTGGTCGGAAGCGAGGAAGACCGAGGAAGGCCCTGGCGGAATCGTTTGTTGTCATGAATTAG 1137 0.5321 MEWRSFDDHGCYQWVERLRCGDGGIGSWMVEDKWSNKQLDLPMEKAEEAERLLGVAEKLLFDRDLTGSREFAILAQETEPLLEGSDQILAVVDVLLAADDRLNNHHDWYAILQVDRRSDDIDLIKKQYRRLALLLHPDKNRFSHADHAFKLVSEAWDTLSDPAKKSLYDKELGPFSMVDLSAPRWAHQEKLPVRRAGAGSGGGGNQGFDFRNNGTATRDAGADENSRRSPSTFWTACPYCYLLCEYDKIYEGCCLRCQNCERSFHGVSIPTLPPLLAGQEAYYCCWGFFPLTLATANSAGKDAATPSGFPNWTPMASESGRQSENGWNNAEPVVATKPVAKTARAGGVSNGISSGSGSSGRKRGRPRKALAESFVVMN 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1673 378 Gene3D DnaJ domain 96 177 IPR036869 -
Lele27g1673 378 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 45 336 - -
Lele27g1673 378 Pfam DnaJ domain 107 169 IPR001623 -
Lele27g1673 378 SUPERFAMILY Chaperone J-domain 101 172 IPR036869 -
Lele27g1673 378 ProSiteProfiles dnaJ domain profile. 107 172 IPR001623 -
Lele27g1673 378 MobiDBLite consensus disorder prediction 195 229 - -
Lele27g1673 378 CDD DnaJ 107 161 IPR001623 -
Lele27g1673 378 ProSitePatterns Nt-dnaJ domain signature. 149 168 IPR018253 -
Lele27g1673 378 PRINTS DnaJ domain signature 109 127 IPR001623 -
Lele27g1673 378 PRINTS DnaJ domain signature 128 143 IPR001623 -
Lele27g1673 378 PRINTS DnaJ domain signature 144 164 IPR001623 -
Lele27g1673 378 SMART dnaj_3 106 164 IPR001623 -
Lele27g1673 378 MobiDBLite consensus disorder prediction 339 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1673 Lele-ChrLele27 22196959 22199308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1673 48 368 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 47.368 2.21e-90 274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0413 25 2506230 2507827 Lele27g1673 27 22196959 22199308 hybridization
Lele26g0425 26 2604392 2605390 Lele27g1673 27 22196959 22199308 hybridization