Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1666 ATGTCGTACTTGGGTTTTGGCTGTTTTCTACACTCGAAAAGTTGGGTCAGGGAGAGCGCTCTTTGCTTGTCTCATTCTTCTTTCGGCTTCAACGAGGACTTACCAATGATGGAAGATGATAAGAAAAACAAGAAGGTCGCTTTTAGCGAGGAAGACACTGCTGCTCTCTTAGAGAAGTATGATGCAATCACCACTCTAACTTTACTTCAGGAAGTGTCAAATTTAAATTATCCTGAGGGCAAGATTGATTGGAATGAGTTGGTAAAAATTACAGCAACTGGGATATCAAATGCTCGAGAGTGTCAGATGTTATGGCGTCATCTTGCGTATCGCGATGCCTTGACTGAAAATTTGGAAGACGGTGCTGAACCTCTGGACGATGATAGTGACTTGGACTGTGAGATGGAAGTGGTACCCCCTATAAACAATGAGGCTGCATCAGAGGCTTCAGCTTGTGTGAAGGTTATGATAGCTTCTGGTTTGCTTAGTGAAAGAGGTCCTAGTAGCTCAACAATTGAGGCTCCGATGACTATAAATATTCCAAATTGTCATCCATTTACAAATCCTGAGGAAAATATACAGCCCTCAAACTTGAAACAAGGAACAAGTGTTGTTTTTCCTGTTACCGTTCAGAGACAGACACTACCAACTGGATCTGTGACTGAAGGTGTAGAAACCAAGGGAATAACCGGTGGCAAATTGTCTTCCAAAAGGAGAAGAAAAGCATGGTCAGAAGAAGAGGACAAGCAACTACGAGCGGCTGTTCAGAAATGTGGTGAGGGAAATTGGGCAACCATGTCGAAAGGAGATGACTTCCCTATCAAAAGAAGTCCTACACAGTTGGCTCAGAGGTGGAGCATTTTACGAAAGAAAGATGGCACTACAAGTTCAGGAACGAACTTGACCAGCTCACAGTTTACTGCTGAACAACTGGCAACTCGTCACTCGTTATCTTTAGCCCTTGATATGCCATTAAAAAAATTAACTGCTCCTGGAACAACTGACCCTGCTAGGACTTCATTAAATGCATCAATTAAGAACGTTGTGCAACCTATTAATACTGCTGAAACTTCAACAGTTCAGAGCAGCTCTGTGCCACCTCAGCTTCCATCTCAACAAGCTTCTTTGGGTCCTTCTGCTTCCATGTCAAATTCTTTAGTCCCTGAAAGAACAATGCTGAAGTCTAATACAAGTGCGGATGCTGCTGTAAGAGCTACTGCAGTTGCAGTTGGGGCGCGTATTGTCTCCTCGGCAGATATTTTGTCAATGCAAAAGGCTACTCAGGACAGAAGCGCTGGACAAATTATTTCCACAGGAAGTTCTTCAATGAAGCTGTCCGCATCTGCTGGTTCTGTCACCCACCCAAAAGTTCTTATAAATCCAGCTGTTTCTCCTAAAGCTGTTGCCACTACACCTTCTTGCACTACTGCTGTTATATCTGTCTCCCCATCGGGTGAGAGTAGTTCTAATGCCCATAGCTCGGTGGTCAATAGTCTTACCCTGGAGCAAGTTAATCCTAACCAAGAATCCAAAGTCTCTGATTCTAGCGTTGAAACAAAAGAGAGGGACCAAGTTGATGAGGCACGAGTCACGAAAAGTATACCTGATGAGGAGGTTTTAGAAAATAAACCAGTTTCACAAAATCCAGGAGAGCTTGATGAGCAGGGAGTAGTTTGA 1677 0.4359 MSYLGFGCFLHSKSWVRESALCLSHSSFGFNEDLPMMEDDKKNKKVAFSEEDTAALLEKYDAITTLTLLQEVSNLNYPEGKIDWNELVKITATGISNARECQMLWRHLAYRDALTENLEDGAEPLDDDSDLDCEMEVVPPINNEAASEASACVKVMIASGLLSERGPSSSTIEAPMTINIPNCHPFTNPEENIQPSNLKQGTSVVFPVTVQRQTLPTGSVTEGVETKGITGGKLSSKRRRKAWSEEEDKQLRAAVQKCGEGNWATMSKGDDFPIKRSPTQLAQRWSILRKKDGTTSSGTNLTSSQFTAEQLATRHSLSLALDMPLKKLTAPGTTDPARTSLNASIKNVVQPINTAETSTVQSSSVPPQLPSQQASLGPSASMSNSLVPERTMLKSNTSADAAVRATAVAVGARIVSSADILSMQKATQDRSAGQIISTGSSSMKLSASAGSVTHPKVLINPAVSPKAVATTPSCTTAVISVSPSGESSSNAHSSVVNSLTLEQVNPNQESKVSDSSVETKERDQVDEARVTKSIPDEEVLENKPVSQNPGELDEQGVV 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1666 558 SUPERFAMILY Homeodomain-like 238 291 IPR009057 -
Lele27g1666 558 Gene3D - 233 295 - -
Lele27g1666 558 MobiDBLite consensus disorder prediction 514 539 - -
Lele27g1666 558 Pfam Myb-like DNA-binding domain 240 285 IPR001005 -
Lele27g1666 558 ProSiteProfiles Myb-like domain profile. 235 289 IPR001005 -
Lele27g1666 558 MobiDBLite consensus disorder prediction 221 248 - -
Lele27g1666 558 CDD SANT_TRF 241 290 - -
Lele27g1666 558 MobiDBLite consensus disorder prediction 357 383 - -
Lele27g1666 558 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 235 293 IPR017930 -
Lele27g1666 558 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 36 540 - -
Lele27g1666 558 SMART sant 239 291 IPR001005 -
Lele27g1666 558 MobiDBLite consensus disorder prediction 500 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1666 Lele-ChrLele27 22153571 22161032 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele27g1666 Myb_DNA-binding 5.1e-09 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0418 25 2546711 2553627 Lele27g1666 27 22153571 22161032 hybridization
Lele26g0430 26 2640453 2648260 Lele27g1666 27 22153571 22161032 hybridization