Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1651 ATGGGGAGAGGGAAGATCGTGATTAGGAGAATCGACAATTCGACGAGCAGGCAGGTAACGTTCTCCAAAAGAAGAAACGGTTTGCTGAAAAAGGCGAAGGAGCTCGCAATCCTGTGCGACGCTGAGGTAGGAGTTATGATCTTCTCGAGCACCGGCAAGCTCTACGACTTCGCCAGCACAAGCATGAAATCAGTAATAGAACGATACGGCAAAACTAAAGAGGAACATCATCAACTAGGAAGTTCATCCTCTGAAGTAAAGGTATTTCATGAGTTCCTTCTATCAGTTTTCACATGCAAGATTACTACCACAACACAAATTACATACTTGAGATACGATCATGAAGTGCGCGGGAATAAATTCATGGAGCAGTTGAAAGGCAAGTTCTATTCCATAGTAGAAAGCTACTTCCTATTCCTGGTGTTTTCCACTCTGAAAAGAGTAGGTTTGATATCATTGAGAATTGAGAAGCTGGGGAAAGAACAAGAACACTGCGAAACACGCTTCTATAACTGCTCATGGCTACCAGTTTTGGCAAGGGGAGGCAGCAATGTTGAGGCAACAGCTGCAGAACTTGCAAGAGAGTCACCGGATCAACTTTTAATGGGCGAAATACAGGAAATAAACCAAAGGGGAAACCTCTTACGGCAGGAAAATGTGGAACTGCGCAAGAAGGTCTATGGAACAAGAGATGGAAACGAAACAAACAGAAATTCTGTTCTCACAGATGGTCTAGGCACCGGAGAGAATTTGCATGTGCCACAGATTGCAATTGCACTGATGCATCTACAGGAGAATTCTGTATCTTGA 810 0.4383 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASTSMKSVIERYGKTKEEHHQLGSSSSEVKVFHEFLLSVFTCKITTTTQITYLRYDHEVRGNKFMEQLKGKFYSIVESYFLFLVFSTLKRVGLISLRIEKLGKEQEHCETRFYNCSWLPVLARGGSNVEATAAELARESPDQLLMGEIQEINQRGNLLRQENVELRKKVYGTRDGNETNRNSVLTDGLGTGENLHVPQIAIALMHLQENSVS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1651 269 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 117 - -
Lele27g1651 269 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele27g1651 269 Coils Coil 205 225 - -
Lele27g1651 269 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lele27g1651 269 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele27g1651 269 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Lele27g1651 269 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
Lele27g1651 269 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele27g1651 269 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele27g1651 269 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele27g1651 269 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele27g1651 269 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele27g1651 269 FunFam MADS-box transcription factor MADS-MC 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1651 Lele-ChrLele27 22009366 22018566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1651 1 95 MADS-box Gene Family AT2G14210 75.000 7.65e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele27g1651 SRF-TF 1.6e-24 No_clan