Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1646 ATGATTGGTCCACGGCAGAGACTCCTCCAAGTGGGGAATTGCGTGGCGCGAATGGAAAGTTGGTTCTTGCCGCTCTGGCCTCAGCCTGAGTGCGGCCCCTTTATCGTTCTTAAAAGCACACGGAGATCGGAGCAGCAAAAGCTTGGGCAAGAGCAGCGTCTCACCGTACACGCCATGCCCATTGTATTTACTTCTCACCGCATTTTATTCAATCCCCCATTCGTCCCCACTCCTATTTCAAAGCTTCGTTTTCGTTCCTCACGCTCTTCTTCTATTCTTTGTTTCTCTTCTCGCTCAGATATGGATACCAACGAAGGTCTAAGTATCTATCCATCGCACCGCTGTAAAACTCTTCACCTGGTTAGACATGCACAAGGGACTCACAACGTAGCGGGAGAAAAAGACCACGAAGCATACCTGTCTTATGATTATTTTGATGCACAATTAACCCCTCTTGGCTGGAAGCAGGTTGATAACCTGCGGGCGCACGTTCAAGCATGTGGTCTTTCCAAGAAAATCGAATTGGTGATTTCTTCCCCCTTGTTAAGGACCATGCAAACAGCAACTGGTGTCTTTGGTGGTGAAGCTTACACTGACGGGATTGATGCCCCTCCTCTGATGAAAGAAAATGTGGGACCTAGTGAACATGCTGCAATTTCTAGTCTGAATTCCCCTCCATTTATAGCAGTTGAGCTTTGCCGGGAGCATTTGGGAGTTCATCCTTGTGATAAGAGAAGAAGCATTCATGAGTACCGGGATATGTTCCCTGCAATTGACTTTTCACAGATAGAAAGTGACGAGGACATTTTGTGGACACCTGACATTAGAGAGAAGGATGAAGAAGTTGCTGCTAGGGGGATGAAGTTTTGGAAATGGTTATGGACACGTAAAGAGAAGGAGATAGCAATTGTTTCTCACAGTGGTTTTCTATTTCATGCCCTAAGCGCTTTTGGAAATGACTGCCATCCAACTGTGAAGAGTGAAATATGCAAACACTTTGCTAATTGTGAGCTGCGTTCAATGGTTATCGTTGACAGAGGTTTGATTGGATCAGACAAGTCTACTACAAACTATCCTGGCAAGATTCCTCATGGCCTTGATCTTCCTACGGATATTGCTGACGAGAAAAATAAAGGGAATGGACCGACCCAGTAA 1155 0.458 MIGPRQRLLQVGNCVARMESWFLPLWPQPECGPFIVLKSTRRSEQQKLGQEQRLTVHAMPIVFTSHRILFNPPFVPTPISKLRFRSSRSSSILCFSSRSDMDTNEGLSIYPSHRCKTLHLVRHAQGTHNVAGEKDHEAYLSYDYFDAQLTPLGWKQVDNLRAHVQACGLSKKIELVISSPLLRTMQTATGVFGGEAYTDGIDAPPLMKENVGPSEHAAISSLNSPPFIAVELCREHLGVHPCDKRRSIHEYRDMFPAIDFSQIESDEDILWTPDIREKDEEVAARGMKFWKWLWTRKEKEIAIVSHSGFLFHALSAFGNDCHPTVKSEICKHFANCELRSMVIVDRGLIGSDKSTTNYPGKIPHGLDLPTDIADEKNKGNGPTQ 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1646 384 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 112 350 - -
Lele27g1646 384 SUPERFAMILY Phosphoglycerate mutase-like 116 346 IPR029033 -
Lele27g1646 384 FunFam Phosphoglycerate mutase-like protein 1 112 359 - -
Lele27g1646 384 CDD HP_PGM_like 117 188 IPR013078 -
Lele27g1646 384 Gene3D - 110 360 IPR029033 -
Lele27g1646 384 Pfam Histidine phosphatase superfamily (branch 1) 118 191 IPR013078 -
Lele27g1646 384 SMART PGAM_5 117 313 IPR013078 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1646 Lele-ChrLele27 21976384 21981438 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1646 27 21976384 21981438 Lele01g0111 01 663967 665736 CCT
Lele27g1646 27 21976384 21981438 Lele03g0112 03 628797 630573 CCT
Lele27g1646 27 21976384 21981438 Lele04g0108 04 632708 634432 CCT
Lele25g0438 25 2732030 2736771 Lele27g1646 27 21976384 21981438 hybridization
Lele26g0449 26 2828616 2834154 Lele27g1646 27 21976384 21981438 hybridization