Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1645 ATGGAGGTGTTTGAACATGATTTCTTGGAGGAATTGCTAGCTCTGAAAAGAGAAGCATGGGACACAATTCCAAGTCCAAATGAAGAAAACCAGTTCTTGCTCCCTAATAATGCTTATAATAGTTTGGACTGCTTTGATCCAAACACTCTTGCCTTTCTGCCAAATTCCTTCTCTGATCAACAGGTACCTCAAAGCTACAATAACAACTATTACAGTAGCTTCAACGAAATCTACAGCTCATTACTTGATGAGTTTTCTACGCCACAGATAATCGATTCTACTTCATCTCCCTACACCACTCTTGATACAACGACTTCTTCACTTAGCACTACCCCTCCTTTTCTGGTTCAAGACGACAATAACCCCTTGTCGTCGTCCACCATGACGATGGAAGACGAGCTTCAGATTTTGGAGCTCAAAACGACATGTAAGATAGAGTCCATCAACCATTCTCCGGAAATAACGCAAGTTTTCAACATGGGCACTTGTAATTTGGAAAGCAAGAATCGACCCAAGAAACCGCTGGGATTGCCCTCCAAGAATCTAATGGCTGAGAGGAGAAGAAGAAAGAGGCTAAATGATCGTCTCACCATGCTAAGATCTATTGTCCCCAAGATCAGTAAGATGGATAGAACATCTATACTTGGAGACACAATAGACTACATGAAAGAACTTCTGGAGAAGATTAAAGATTTGCAGCAAGAAGTGGACTTGGATTCAAACATGTTGGGCGTTTTGAAGGATGAGAAACCAAATGAAATCATAGTGAGAAATTCACCCAAGTTTGAAGTGGAGAGAAGGAATGTGGACACGAGGGTTGAAATATGCTGCGCAGGGAAGCCAGGCTTGTTGCTGTCCACAGTGAATACCTTGGAAGCCTTTGGGCTTGAGATTCAGCAATGTGTTATCAGCTGCTTCAATGATTTTACGATGCAGGCTTCTTGCTCAGAGGAATTGGAGCACAGGACGATACTGGGTTCGGGGGATATAAAGCAAGCGTTATTTAGAAGCGCAGGATATGGAGGAAGATGTTTGTGA 1038 0.4258 MEVFEHDFLEELLALKREAWDTIPSPNEENQFLLPNNAYNSLDCFDPNTLAFLPNSFSDQQVPQSYNNNYYSSFNEIYSSLLDEFSTPQIIDSTSSPYTTLDTTTSSLSTTPPFLVQDDNNPLSSSTMTMEDELQILELKTTCKIESINHSPEITQVFNMGTCNLESKNRPKKPLGLPSKNLMAERRRRKRLNDRLTMLRSIVPKISKMDRTSILGDTIDYMKELLEKIKDLQQEVDLDSNMLGVLKDEKPNEIIVRNSPKFEVERRNVDTRVEICCAGKPGLLLSTVNTLEAFGLEIQQCVISCFNDFTMQASCSEELEHRTILGSGDIKQALFRSAGYGGRCL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1645 345 Pfam Helix-loop-helix DNA-binding domain 183 225 IPR011598 GO:0046983
Lele27g1645 345 CDD ACT_UUR-ACR-like 271 312 - -
Lele27g1645 345 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 80 339 - -
Lele27g1645 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 238 IPR036638 GO:0046983
Lele27g1645 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Lele27g1645 345 MobiDBLite consensus disorder prediction 98 123 - -
Lele27g1645 345 Gene3D - 177 241 IPR036638 GO:0046983
Lele27g1645 345 SMART finulus 182 231 IPR011598 GO:0046983
Lele27g1645 345 Coils Coil 215 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1645 Lele-ChrLele27 21962860 21964219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1645 149 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 61.692 7.12e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele27g1645 HLH 2.5e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0439 25 2749730 2753671 Lele27g1645 27 21962860 21964219 hybridization
Lele26g0450 26 2845571 2846904 Lele27g1645 27 21962860 21964219 hybridization