Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1642 ATGGGAACTGGATGGAGAAGAGCCTTTTGCACTCGTGACCCTGAATCTACCATATCCGATAAGCAGCACAGAGGCACGAGTCCAAGCCCCAGCCCCAGAAGCTGTGTTCGATTGGGTTTTCTTTCCGGCGGAAGCAACCCTTCCACTCCACGCTTGCAGCAGCAATCTCAAGCTGTGTCTAGTCCGAGCTTGCGTTGCCGAACAGTTTCCGAAGCAGCAAACGTGAATGAGAGCCCCAGGTTTCAAAGCAAAAATACTCTCAGGGCAACCAAGTCCCCCAAGACCAGTTCAACCTCAAATCCCACATCTCCGCGTTCTCCTTTGAAGTTATCTCTCTTCAGGAATAGCTTCAAATTCCGGAGTAGTTGTGGAATCTGTTTTAATAGCGTGAAAGCCGGTCAGGGAACGGCCATTTACACTGCAGAATGTACTCACGCCTTTCACTTTCCCTGTATCGCCGATTATGTACACAAACATGGAAGTCTCGTCTGCCCCGTCTGCAACGCTACCTGGAAAGACGTGCCTCTACTAGCCGCACACAAGAACCACGCCACAGAATCCGCCGAAAACAACGACATCGTGGTTGAGAAGAGCGTCGTAAAACCAAATGCTACCCAGAAGACTAAAGAAAACTCACCCCCAGATTTCAGAACCAAGCTTGTTGAAACGCCGCCCCAACAATTGCCACAAAAACTACCAAATCAATCTGATTCGTACAGGTCCTACGACGATGATGAGCCACTTCTATCTCCCACATCCGGTGGTGGTCGAATCATTCCAATACCTGAAGCTGACGAAAACGCCGAAGAAGAAGAAGACGACGTTGAAGAATTCCAGGGATTTTTCGCCAATGCAAAATCTTCATCCTCAATCAAATCTTACTCTGATGACTTGCAAGTAAGCGAAAAAGATTCCAGGACCGTTCAGGTGAAGTTGATACCCGAGTGTGCTGTAGTGTCAGTCTCTCGAACCCACGAGACTTGCGCTTTGGTTCTGAAAGTGAAGGCTCCTCCGCCGCCACCTCCAGTGCGTAGTTGCAATAACAGTTCGGCGCCGCGTCTTGGTCAGTCGCAGCGAGCTCCCATAGATCTCGTAACGGTTCTAGACGTTGGTGGAAGCATGACAGGCTCGAAGCTTCACATGCTTAAGCGCGCGATGCGTTTGGTTATGTCGTCACTCAGCCCAGCCGACAGGCTCTCCATAGTGGCTTTCTCGGCCACTTCCAAGCGGCTCTTACCCTTGAGAAGAATGACGGCTCAAGGACAGCGCGTGGCTCGGCGCATCATCGACCGGCTCGTCTCTGGCCGCGGCACTTGTGTGGGCGATGCTCTCAGAAAAGCCACAAAAGTGCTCGAGGATCGGAGGGAGAGAAACCCGGTTGCTAGCGTGATGCTCCTATCGGACGGTCAGGATGAACGAGTCCAAAGCAGCAACATCAACAACCAACGAAAATCCTCGAACCAAGTGTCCTCGACCCGATTCGCCCACATCGAGATTCCGGTTCATGCGTTCGGATTCGGGAAAAAGAGCGGCTTCAGCCACGAGCCGGCCGAGGATGCATTTGCCAAGTGCGTTGGAGGGTTATTGAGTGTGGTTGTACAGGACTTGAGAATTCAGCTCGGCTTCCAGTCGGGATCATCGGCGGCTGAAATCAGCGGCATCTATTTGTGCGGCGGTCGAACCACAGCACTGAGCTCAGGCTGCGTACGGCTCGGTGACTTGTACGCCGAGGAAGAGAGGGAGTTACTGGTGGAGCTGAGAGTTCCAACGTCGGCTCTGTGGACCCACCACGTGATGACGGTACGGTGCCTGTATAAGGATCCTGCTTCTCAAGAGATCGTATCCAGTAGGGAACAGGCACTACTAGTTCCGCCACCTCAGGGAACGCGAAGCGAACGCTTGAGGAATTTCTTCCTTGCGACTCGAGCCATAGCTGAGTCTCGCCGGCTCGTTGACCACAACGACTTCACGAGCGCTCATCATTTACTGGCTTCGGCTCGCGCTCTCTTGATGCAGGCAAAGTCGAGCTCGGCAGAGGAGCACGTGCGCGTTTTGGAAGCTGAGCTGGCAGAACTTCATTGGCGCACTCAGAACCCGATGGAGCAGCAGATGGTGATGCAGGAACGCAGGAGGGGGTACGAGAGGGAGGTGACGAGCTTGGTCGATGATAATGGGGAGCCGCTCACGCCGACGTCGGCTTGGAGAGCTGCTGAGAAGCTGGCTAAGGTGGCCATCATGAGGAAGTCATTGAACAGAGTCAGGGACTTGCACGGCTTCGAAAATGCTAGGTTTTAA 2295 0.5325 MGTGWRRAFCTRDPESTISDKQHRGTSPSPSPRSCVRLGFLSGGSNPSTPRLQQQSQAVSSPSLRCRTVSEAANVNESPRFQSKNTLRATKSPKTSSTSNPTSPRSPLKLSLFRNSFKFRSSCGICFNSVKAGQGTAIYTAECTHAFHFPCIADYVHKHGSLVCPVCNATWKDVPLLAAHKNHATESAENNDIVVEKSVVKPNATQKTKENSPPDFRTKLVETPPQQLPQKLPNQSDSYRSYDDDEPLLSPTSGGGRIIPIPEADENAEEEEDDVEEFQGFFANAKSSSSIKSYSDDLQVSEKDSRTVQVKLIPECAVVSVSRTHETCALVLKVKAPPPPPPVRSCNNSSAPRLGQSQRAPIDLVTVLDVGGSMTGSKLHMLKRAMRLVMSSLSPADRLSIVAFSATSKRLLPLRRMTAQGQRVARRIIDRLVSGRGTCVGDALRKATKVLEDRRERNPVASVMLLSDGQDERVQSSNINNQRKSSNQVSSTRFAHIEIPVHAFGFGKKSGFSHEPAEDAFAKCVGGLLSVVVQDLRIQLGFQSGSSAAEISGIYLCGGRTTALSSGCVRLGDLYAEEERELLVELRVPTSALWTHHVMTVRCLYKDPASQEIVSSREQALLVPPPQGTRSERLRNFFLATRAIAESRRLVDHNDFTSAHHLLASARALLMQAKSSSAEEHVRVLEAELAELHWRTQNPMEQQMVMQERRRGYEREVTSLVDDNGEPLTPTSAWRAAEKLAKVAIMRKSLNRVRDLHGFENARF 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1642 764 MobiDBLite consensus disorder prediction 41 107 - -
Lele27g1642 764 CDD RING-H2 123 168 - -
Lele27g1642 764 Gene3D von Willebrand factor, type A domain 363 531 IPR036465 -
Lele27g1642 764 SUPERFAMILY RING/U-box 117 173 - -
Lele27g1642 764 SMART VWA_4 361 546 IPR002035 -
Lele27g1642 764 Pfam von Willebrand factor type A domain 364 470 IPR002035 -
Lele27g1642 764 Pfam RING-like zinc finger 123 152 IPR001841 -
Lele27g1642 764 ProSiteProfiles Zinc finger RING-type profile. 123 168 IPR001841 -
Lele27g1642 764 SMART ring_2 123 167 IPR001841 -
Lele27g1642 764 SUPERFAMILY vWA-like 361 537 IPR036465 -
Lele27g1642 764 CDD vWA_C3HC4_type 362 533 - -
Lele27g1642 764 FunFam Probable E3 ubiquitin-protein ligase EDA40 363 528 - -
Lele27g1642 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 178 IPR013083 -
Lele27g1642 764 ProSiteProfiles VWFA domain profile. 363 507 IPR002035 -
Lele27g1642 764 MobiDBLite consensus disorder prediction 223 237 - -
Lele27g1642 764 MobiDBLite consensus disorder prediction 1 107 - -
Lele27g1642 764 MobiDBLite consensus disorder prediction 199 260 - -
Lele27g1642 764 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 122 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1642 Lele-ChrLele27 21936214 21938617 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0442 25 2774738 2777138 Lele27g1642 27 21936214 21938617 hybridization
Lele26g0455 26 2878623 2881024 Lele27g1642 27 21936214 21938617 hybridization