LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele27g1606	ATGTTAAGCGACGACGTCGTAGAGAAAGAATACCGCGTGGACGAGGCGGCAGAAGAGTTCATAGAGAGGTTTCACAGGGAGCTGAGGTTGCAGAAATGACAGTCATATATACGCGAGTACGAAGGAAAAGAACAAGGACAAGCGCCAGACGCAAAGCTTAGGGTATTGAGAGAGAAAGTCGGGGACAAAGCCATGGATGATTACGATAGTGGTGGTCCTAGTCCCGATAAGGCTCCGGCTGCCGAAGACGAGGGCTGCACGGCTCCTTTACCTGAGAAGGTCCAGGTTGGTGGTTCACCGGTATACAGGATTGATAGAAAATTGGGAAAAGGAGGATTTGGACAAGTTTATGTTGGCAGGCGTGTTGGTGCAACAAATTCCATTGAACTGACCGGTACTGGAGCTGTAGAGGTGGCCTTAAAGTTTGAGCATAGAAGCAGTAAAGGCTGCAACTATAGACCACCATATGAGTGGCAGGTTTACAATGTGTTGGGTGGTAGTCACGGTGTTCCACGAGTACATTATAAGGGGAGGCAAGGTGATTATTATATTATGGTAATGGATATGCTTGGCCCTAGTCTATGGGACGTATGGAATAACAACTCTCATGCGATGTCTATAGAAATGGTAGCTTGTATTGCCATTGAGGCAATATCCATATTAGAGAAGATGCATTCTAGAGGCTATGTTCATGGTGATGTAAAACCCGAGAACTTCTTGCTTGGCCCCCCTGGAACTCCTGATGAGAAGAAGCTGTTTCTTGTTGATCTGGGATTAGCTACCAGATGGCGTTATAATTCAACTGGCCTTCATGTTGAGTATGATCAACGCCCAGATGTATTTAGGGGGACGGTACGATATGCTAGTGTGCATGCTCATCTTGGTAGAACTGGCAGCAGAAGAGATGACTTGGAATCACTTGCTTATACACTGATCTTCCTTCTTCGTGGTCGGCTTCCATGGCAAGGATATCAGGGAGAAAACAAAGGATTCCTTGTCTGCAAGAAGAAGATGGCCACATCTCCAGAAACGTTGTGCTGTTTTTGTCCTCAACCCTTTCGACAGTTTGTCGAGTATGTTGTGAATCTGAAGTTTGATGAAGAACCAAATTATGCCAAGTATATCTCCCTTTTTGATGGAATTGTTGGTCCGAATCCAGACATCAGGCCAATCAATACTGAGGGGGCTCAGAAACTTATATTTCAGGTTGGTCATAAGAGAGGACGGTTGACCATAGAAGATGATGACAACGAACAACCAAAGAAGAAGGTCAGAATGGGAATGCCAGCAACTCAATGGATCAGCGTTTACAATGCTCGTCGACCAATGAAGCAAAGGTATCATTACAATGTGGCGGATATGCGTCTGTCCCAACACATTGAGAAAGGAAACGAGGATGGGTTATTTATAAGCAGTGTGGCTTCTTGTTCCAATCTTTGGGCACTTATCATGGATGCTGGGACTGGTTTCTCTTCACAAGTTTATGAACTCTCACCGTATTTTCTTCATAAGGAATGGATTATGGAACAATGGGAAAAAAATTATTACATCAGTGCTATAGCAGGGGCTAATAATGGAAGCTCATTGGTTGTGATGTCTAAAGGGACCCAGTACTTGCAGCAGTCCTATAAAGTCAGCGATGCATTCCCATTCAAGTGGATTAATAAAAAATGGAGAGAGGGCTTTTACGTCACTGCCATGGCAACTGCTGGAAGTAGATGGGCAATTGTCATGTCCCGTGGTGCAGGATTTTCAGATCAGGTTGTGGAACTTGATTTCCTTTATCCCGGTGAAGGTATTCACCGGAGATGGGATAACGGTTACCGCATCACATCTACTGCTGCGACGTGGGACCAAGCTGCTTTTGTTCTTAGCATCCCGAGAAGAAAACCAGCTGATGAAACTCAAGAGACGCTTCGTACATCTGCATTCCCTAGTACTCATGTTAAGGAAAAATGGGCCAGGAATTTGTATATAGCATCTATTTGTTATGGGAGAACCGTTTCATGA	2010	0.4478	MLSDDVVEKEYRVDEAAEEFIERFHRELRLQKXQSYIREYEGKEQGQAPDAKLRVLREKVGDKAMDDYDSGGPSPDKAPAAEDEGCTAPLPEKVQVGGSPVYRIDRKLGKGGFGQVYVGRRVGATNSIELTGTGAVEVALKFEHRSSKGCNYRPPYEWQVYNVLGGSHGVPRVHYKGRQGDYYIMVMDMLGPSLWDVWNNNSHAMSIEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRYNSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCFCPQPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIFQVGHKRGRLTIEDDDNEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADMRLSQHIEKGNEDGLFISSVASCSNLWALIMDAGTGFSSQVYELSPYFLHKEWIMEQWEKNYYISAIAGANNGSSLVVMSKGTQYLQQSYKVSDAFPFKWINKKWREGFYVTAMATAGSRWAIVMSRGAGFSDQVVELDFLYPGEGIHRRWDNGYRITSTAATWDQAAFVLSIPRRKPADETQETLRTSAFPSTHVKEKWARNLYIASICYGRTVS	669

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele27g1606	669	CDD	STKc_CK1	102	378	-	-
	Lele27g1606	669	FunFam	casein kinase 1-like protein HD16	75	425	-	-
	Lele27g1606	669	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	229	241	IPR008271	GO:0004672\|GO:0006468
	Lele27g1606	669	PANTHER	CASEIN KINASE-RELATED	102	634	-	-
	Lele27g1606	669	MobiDBLite	consensus disorder prediction	62	89	-	-
	Lele27g1606	669	Gene3D	Transferase(Phosphotransferase) domain 1	75	423	-	-
	Lele27g1606	669	SUPERFAMILY	Protein kinase-like (PK-like)	102	382	IPR011009	-
	Lele27g1606	669	SMART	serkin_6	102	401	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele27g1606	669	Pfam	Protein kinase domain	102	336	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele27g1606	669	Pfam	Cotton fibre expressed protein	13	40	IPR008480	-
	Lele27g1606	669	ProSitePatterns	Protein kinases ATP-binding region signature.	108	141	IPR017441	GO:0005524
	Lele27g1606	669	ProSiteProfiles	Protein kinase domain profile.	102	401	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele27g1606	Lele-ChrLele27	21722648	21732488	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele27g1606	107	378	MAP Kinase Kinase Kinase	AT5G50180	22.615	4.69e-08	53.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1-Pl	Lele27g1606		Pkinase	1.2e-15	CL0016