Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1596 ATGAGTGTTGAACCCCAGAATTCTGAAGCAGAGAGCAGCTCAAACTCATTCTCCTCTCCACCGTCATCGCCCCCTTCAAGAAGGGCTCTTAAGAACTCAGTCTCACATGGTAAGTCTCAGGAACCAGAATCAAAAAAGATAAAACGCATTCGAGACTCCAATAAACATCCCGTTTATCGTGGGGTCCGTATGCGTAGTTGGGGCAAATGGGTTTCTGAAATTCGCGAGCCGCGCAAGAAATCTCGCATATGGCTGGGTACATTCTCAACCCCTGAAATGGCCGCGAGGGCACACGACGTCGCTGCCTTGAACATCAAAGGGAACTCCCCCATTCTCAATTTTCCTCAACTAGCAGACTCGCTGCCCCGCCCCGCCTCCGTCTCTCCTCGCGATATTCAGGCAGCTGCAGCAAAAGCCGCTCAAATGGATCACTTTGACTTACCGTCGTCGTCATCATCGGCCTCGTTAATGTCATCATCATCTTCTATGACGTCGTTGGTTTCGGCAATGGAAATGTGCGGTGGTTCGGAGGAATTGAGCGAGATTATAGAGTTGCCGAGGTTGGAAACAAGTGAGGAGACTTGTGAGTTTAGGAAGGAGTTTGTGCTCGTGGACTATATATATGATGGGTGGATGTATCAGCCAACATGGTTACAGAGCATGGAAGATTGCGACGGGTACGTTGCTGATCAACTAGCAGTGACTGAAGAGAGTGGAATCATAGATAACCTTGATAGTTTGCTCGGGAATTACTGA 756 0.4894 MSVEPQNSEAESSSNSFSSPPSSPPSRRALKNSVSHGKSQEPESKKIKRIRDSNKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALNIKGNSPILNFPQLADSLPRPASVSPRDIQAAAAKAAQMDHFDLPSSSSSASLMSSSSSMTSLVSAMEMCGGSEELSEIIELPRLETSEETCEFRKEFVLVDYIYDGWMYQPTWLQSMEDCDGYVADQLAVTEESGIIDNLDSLLGNY 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1596 251 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Lele27g1596 251 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Lele27g1596 251 MobiDBLite consensus disorder prediction 1 55 - -
Lele27g1596 251 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Lele27g1596 251 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Lele27g1596 251 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 28 192 - -
Lele27g1596 251 MobiDBLite consensus disorder prediction 1 37 - -
Lele27g1596 251 CDD AP2 59 115 IPR001471 GO:0003700|GO:0006355
Lele27g1596 251 SUPERFAMILY DNA-binding domain 58 116 IPR016177 GO:0003677
Lele27g1596 251 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Lele27g1596 251 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Lele27g1596 251 MobiDBLite consensus disorder prediction 38 55 - -
Lele27g1596 251 FunFam Ethylene-responsive transcription factor 2 57 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1596 Lele-ChrLele27 21652487 21653242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1596 32 227 AP2-EREBP Transcription Factor Family AT5G11590 61.500 1.06e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele27g1596 AP2 4.6e-14 CL0081