Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1593 ATGTGTGAAAACTTGTGTGACCATTCATGTATTAACTGTTTGCTGCTATTCTCTGTGTTTTCTTCTTTCCTTCCGAGTGTTGAAGCACGAGACCCAGGACGGATCCATGTAAGCACAGCCATGGTACTAGTGGTGCTCTCCATAATGTTTACGATAATACTTGTATTGATTGTTTATATAAAATTCAGCCGAACCAGTTCTTTTGAGCTTCTGAACCAAAGCATCCATCCCCAGAACTTGGATCGATCAGAGCAGTCCAAGTTTTATGGGATTGACGAGCAAGTAATCAGAGCACTCCCTGTATTCGAGTTTTCTTTACTCAAAGGATCAAAAGAAGGCCTAGAATGCGTTGTTTGCCTGTCAAGATTTGAAAACAGAGAAACTCTTAGGTTGCTCCCAAAGTGCAAGCATGCTTTCCAAATGAATTGCATAGACATGTGGTTTGAAGGTCACTCTAATTGTCCCCTCTGTAGGGGCAGGGTAGACCCAGGGGATATCAAGAGTTTCACTTCTTCAATCAGCTCAAGAGGCTTATGGAAGGTGGAGGAGGGCGAGAAGGAAGAAGAACTACTCATTGATAATGATGGAAATCGGGAAATTATGCACAAGTTCAATCACAGAATAGTTTTGTCAGGTTTTGTTACGAGGAGTATATGGAGTGATCTTACTGCGATGGATTTGCTATTCTTGAACTCGGAAATCCTCAGTGTTATGTCGAGCAGAAGGTTCCTTGATTCAGAATCCGCCAACGGGGAATCGTCACGATGTATTTCAAACCTTTCATCTACTTCCAACGAGGAACAAAACTCGCACAAGCCAGTGAAATGGAGTGGTAAGAGATCAATGTCTGAGATTACAATTGTTCCGAGGTTGAACGAAATCAACAGAATGAAGAACCTAGCAGCATGTGGCGACAATAATGGGAGTGAGGAGAGATCATGGAATATATTGTGGGCAATCGCGAGGATAACCGTGCTAGGATTTTCCAGACAAGAAAGAAGTTCAACGGAGTTAGAATCGAAACAATTAGGTTCATCAAACGTATCTCATGCTACGGATTTCTATGGAAAAGGATCTCTCCATAGCTTGATGGTCGAGGAAGATATGGAACATCAGCCTCAAATTCACCTCAGCGTCCGAACCCATAAAGAGATAAGCAAACATGATGTTCAATTAACCTCACCAAGGCCTTCTACCTCTGAATCACCATGGACGCGTTCCCCACAGTCAATTTCTCCTCCTCCTCCTTCCCTCCTTTACTACTGCATCGCTTCACTCCATCGCCAAGATGGTAATATCTACGCAATCGCAGCCTCAAAGGGCTTCGTCTTTACTGGCTCCGACAGCAACAGAATCCGCGTGTGGAAGCAGCCTGACTGCATGGACAGAGGATACCTCAGAGCTAGCTCCGGCGAAGTCCGATCCATTTTGGCTTACAGTGACATGATCTTCTCGACCCATAAAGATCACAGGATTCGAATTTGGAACTTCATGGTTTCCGACACTTTCAAATCCAAAAAGGTCGCCACTCTTCCCAGAAAAAGCTCGTTTCTTTTGTTCTCCAAGGGAAGCAATGCCCAGAAACATAAAGACTATGTTTCTTGTATGGCCTATTACCATTCAGAAGGGCTCTTGTACACTGGCTCTCATGACAGAACAGTGAAGGTTTGGAGGGTTTCAGACAGAAAATGCGTGGATTCATTTGTGGCCCACGAAGATAATGTGAATTCACTGATGGTGAACCAAGACGATGGGTGTCTTTTCAGTTGCTCCTCTGATGGGTCGGTGAAAATATGGAGGAGGGTGTACACAGAAGACTCGCACACCCTCACAATGACTCTTAAATTCCAGCCTTCCCCTGTGAATACAATGGCATTGAGCACATCCTTTAACCACTGCTTTCTCTACTCGGGGTCCTCAGATGGGATGATTAATTTCTGGAAGAAAGAGAGGCTGTGTTATAGATTCAACCATGGAGGATTTTTGCAGGGCCATCGTTTTGAAGTTCTATGCCTAGCGACGGTGGGGAACGTGATATTCAGTGGATCGGAGGATACGACGATAAGGGTATGGAGGAGAGAGGAAGGGAGCTGCTACCATGAGTGTTTATCAGTGTTAGAGGGACACAGAGGGCCGGTGAGATGTTTAGCAGCTTGCCTTGAGATGGAGAAGCTGGTGATGGGGTTTTTGGTGTATAGTGCCAGTCTCGACCAGACATTCAAAGTGTGGAGGGTGAAGCTTTTGCCTGAAAATTTGTGCATCGAGTTCACTGATCAGCGCGACGCCGGGAAAAAGATTGCAGACTACGATATGAGTCCTGTTTTGTCGCCATCGTGGGTTGAGAAGAAGCTTCGAGATACCTGTTTTCAGTGA 2373 0.4505 MCENLCDHSCINCLLLFSVFSSFLPSVEARDPGRIHVSTAMVLVVLSIMFTIILVLIVYIKFSRTSSFELLNQSIHPQNLDRSEQSKFYGIDEQVIRALPVFEFSLLKGSKEGLECVVCLSRFENRETLRLLPKCKHAFQMNCIDMWFEGHSNCPLCRGRVDPGDIKSFTSSISSRGLWKVEEGEKEEELLIDNDGNREIMHKFNHRIVLSGFVTRSIWSDLTAMDLLFLNSEILSVMSSRRFLDSESANGESSRCISNLSSTSNEEQNSHKPVKWSGKRSMSEITIVPRLNEINRMKNLAACGDNNGSEERSWNILWAIARITVLGFSRQERSSTELESKQLGSSNVSHATDFYGKGSLHSLMVEEDMEHQPQIHLSVRTHKEISKHDVQLTSPRPSTSESPWTRSPQSISPPPPSLLYYCIASLHRQDGNIYAIAASKGFVFTGSDSNRIRVWKQPDCMDRGYLRASSGEVRSILAYSDMIFSTHKDHRIRIWNFMVSDTFKSKKVATLPRKSSFLLFSKGSNAQKHKDYVSCMAYYHSEGLLYTGSHDRTVKVWRVSDRKCVDSFVAHEDNVNSLMVNQDDGCLFSCSSDGSVKIWRRVYTEDSHTLTMTLKFQPSPVNTMALSTSFNHCFLYSGSSDGMINFWKKERLCYRFNHGGFLQGHRFEVLCLATVGNVIFSGSEDTTIRVWRREEGSCYHECLSVLEGHRGPVRCLAACLEMEKLVMGFLVYSASLDQTFKVWRVKLLPENLCIEFTDQRDAGKKIADYDMSPVLSPSWVEKKLRDTCFQ 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1593 790 FunFam E3 ubiquitin-protein ligase ATL6 79 163 - -
Lele27g1593 790 SUPERFAMILY WD40 repeat-like 422 745 IPR036322 GO:0005515
Lele27g1593 790 MobiDBLite consensus disorder prediction 386 412 - -
Lele27g1593 790 MobiDBLite consensus disorder prediction 251 271 - -
Lele27g1593 790 SUPERFAMILY RING/U-box 111 162 - -
Lele27g1593 790 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 568 599 - -
Lele27g1593 790 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 394 746 IPR045182 -
Lele27g1593 790 Pfam WD domain, G-beta repeat 612 648 IPR001680 GO:0005515
Lele27g1593 790 Pfam WD domain, G-beta repeat 701 743 IPR001680 GO:0005515
Lele27g1593 790 Pfam WD domain, G-beta repeat 661 691 IPR001680 GO:0005515
Lele27g1593 790 Pfam WD domain, G-beta repeat 529 557 IPR001680 GO:0005515
Lele27g1593 790 Pfam WD domain, G-beta repeat 563 599 IPR001680 GO:0005515
Lele27g1593 790 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 526 560 - -
Lele27g1593 790 SMART ring_2 116 157 IPR001841 -
Lele27g1593 790 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 164 IPR013083 -
Lele27g1593 790 Gene3D - 374 521 IPR015943 GO:0005515
Lele27g1593 790 Gene3D - 660 779 IPR015943 GO:0005515
Lele27g1593 790 MobiDBLite consensus disorder prediction 391 407 - -
Lele27g1593 790 ProSiteProfiles Trp-Asp (WD) repeats profile. 662 701 IPR001680 GO:0005515
Lele27g1593 790 CDD WD40 431 744 - -
Lele27g1593 790 ProSiteProfiles Trp-Asp (WD) repeats profile. 568 599 IPR001680 GO:0005515
Lele27g1593 790 CDD RING-H2_EL5_like 115 158 - -
Lele27g1593 790 Pfam Ring finger domain 115 158 IPR001841 -
Lele27g1593 790 SMART WD40_4 607 648 IPR001680 GO:0005515
Lele27g1593 790 SMART WD40_4 655 692 IPR001680 GO:0005515
Lele27g1593 790 SMART WD40_4 561 600 IPR001680 GO:0005515
Lele27g1593 790 SMART WD40_4 419 456 IPR001680 GO:0005515
Lele27g1593 790 SMART WD40_4 519 558 IPR001680 GO:0005515
Lele27g1593 790 SMART WD40_4 699 744 IPR001680 GO:0005515
Lele27g1593 790 SMART WD40_4 459 496 IPR001680 GO:0005515
Lele27g1593 790 ProSiteProfiles Trp-Asp (WD) repeats profile. 526 567 IPR001680 GO:0005515
Lele27g1593 790 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Lele27g1593 790 MobiDBLite consensus disorder prediction 251 278 - -
Lele27g1593 790 Gene3D - 522 659 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1593 Lele-ChrLele27 21637414 21640913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1593 38 335 C3H Transcription Factor Family AT2G20030 36.467 1.34e-47 172