Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1576 ATGCACGCCATTTCGGTGGTTTCATCGTCTATATGTTATCCTGGCATCTTATCTGACGCTCATTTCGGTGAGTGTCTTTCACTTTGTGAAGTTAATTTGCATTTTGCTTTTTTGACTTGGATGACGTCTACTGACAATTCCCTACTTCACCAAGGACTCATCGCATATCTCTTTTTGTCGGTGCGGACTAGTGGTCCTACCAGGCGTTCTACAAAAGGACAGTGGACTCCTGAAGAGGAGGATGAAATAATAATTGATTTGGTGAACAAATATGGGCCAAAAAAATGGTCTACTATTGCACAGCACTTACCTGGACGAATTGGTAAGCAATGCCGAGAAAGGTGGCATAATCATCTCAATCCTGCTATAAACAAAGAAGCATGGACCCAAGAAGAGGAGTTGGCTCTAATTCGTGCACATCAAATTTATGGGAACAGATGGGCTGAATTGACGAAGTTCTTGCCTGGAAGGACGGACAATGCTATAAAAAATCACTGGAACAGTTCTGTCAAAAAGAAATTGGATTCTTACTTGGCGTCAGGTTTGCTTATACCTCATGTTGGACAACCAAATCAACTCATGGTTTCTGCATCTTCGAGATTACTTTGTAGTGGAGATGATAGTAGTCAGAAGGGAATCGGAGAGGAAGTTTCAGAGTGTAGCCAAGAGTCTGCTAGTGCTAGTTGCCTACCGGTTTCCCGAGAAATGACAAGGGTTGTTTTACATGCTAGAGAAGAAACCAAGCCAAATGAATATTCTAGTCTAGGAAAGGAGCAAAGTCCTAGTCAAGCATCATGTTCAGAGCCATATTATGTATCATTGGATGATGTTACCATATCCAACTCGGACATTGCTCGTGAAGAGGCTTCCTCTTCTCAATTCACTGAGCAAAAATACTCACACGAGCCTGGAAATTCTGCAGGCATGGATAATGGATTCCAATTACATGGTTTGCTCAGTATTTCATCATTAGACTTGGGTGAGGAATTATCACTTTTGCAAGGAGATTGTATAGTTTCTGACGAAAACAATGACATTGTGAATGCTCAATTTCATACTTCAGTGGGGTTAGGTATTGCAACATCTATGGCGCCCACATCTATGGATTCTTCTAAACCAGAGGACATGTTGATAGCTAATGAAGAATACTGTAGAATTATATTCTCAGATGCAATGAATGATGGGACCTTTTCATCTGGAGATCATAGCAAAGGTGTTGATATGGTTTTGTCTGCATGCACTTCAAATCTTTTGCAATCATCTGAGATCCAGATATCTGATGCTGGGCGAACCTCAGCTGCCCTCAAGACTTGTCCAACAAGATCTAATAATTTAATAGAATCTTCATGCTGCCAATCATTCCCAATTGTTCCTTCATCGCTTTCAGATAATGATGGTAGAGTATCGTACACTGCTGAAGCCGGACGAATATATGGAGGTGATGATCAGCAATTTGCCTCCAACGCACATGACAGCTTCATTTACCCCAACGACTCATCCATCTCACCTTGCATTGATATTATAGATAGTGCTGAAATGCACGATGGACCCAATATTGTGAATGATGCATTAAGATTGGTCCCTGTAAATAATTTTACTTGTGCATCGGATGCCAATCAAATTTGTAATCCTACGGATGAAAAGGAAGATGTGCAAACAGAACAGGAGGACACAGGATCTCTATGTTATGAACCTCCTCGATTTCCAAGCTTGGATATTCCTTTCTTCAGCTGTGATCTTATACAACATGGAGGAGATATGCAGCAAGATTTCAGTCCGCTGGGTATCCGTCGGCTTATGATGTATTCAGGGAACAGTCCAACTCCCTTGATGTTATGGGACTCGCCTTCTCGTGATGATAGTCCAGATGCTTTGTTGAGAAGTGCTGCAAAAACTTTCACAAGTACACCATCCATTTTAAAGAAGCGACGCCGGGACTTATCACCATTATCAGATAAGAGAATCGAAAAGAAACTTGAGACTGACATGACATCCACGTTGACGACACATTTTTCACGTTTGGATGTCATGTTTGATGACAATGAAGCTCAGGCTGCGAATATGCTTCCTCCATCTTCAATTCAGAAAAATAAAAATGGAGCCTCTGATGATGATAAAGAAAATTGTGGGCCAGCTTTGAAAGGAGAACATGTGGAGGGAAAAAATGAATCTACCATTTTGAGGAGCAAAGAATCAGAAAAAGATACCGGTAATAATAACTCTCAGGACGTTAATTCGAGGATGGAGACTGATGTTGAGGCTTCTGCTGCTGCTGAGATTGGGCAACAACCTTCTGGAGTCTTAATTGAACGTGATATGAATGACTTGCTATTGTATTCTCCAAATCAAATTCGTTTTAGCTTGGATAGAATCCACATTTCAAGTGCTAAAACTCCCAAAAACCTGAACAACAGAAGCTTGGAAGCAGCTCCAAATCAGAATATTGCTCCAAAATCATTTCATGGAGCCCCTGGGGAGAATTCTGGTGATCATACTGGGAATGATGCTGGTTTCGAAACATTCAACATATTTGGTGGAACACCTTTTAGAAGAAGCATTGAATCACCTTCAGCATGGAAGTCCCCTTGGTTCATTAACACTTTTCTGACTAGCCCTAGAATTGATACTGAAATGTCGATTGAGGTACTTCAAGTTCTGTTGGATGTCTTTTGTCTTAATGCAGATCACGATTTCCCTCCACTAACACTCTTAACATATCGACAGGATTTTGGGTATTTAATGAGCCCTGGGGATAGAAGCTATGATGCAATTGGGTGGATGAAGCAGGTCAAGGAACAAACTGCGGCTGCATATGCCAATGCTGAGGAGATTTTGGAGATTGACACTCCCAAAGCAGAAGATGCTTCTGGAGGTGCTGGGGATGGCGACCAGGAAGGAAGAGGTCCTCATGATCAGCCTGGCAATCACTGTCAGTTAGCTTCTTCAAATGCTTTGATGGAGCGACGGGTACTTGACTTTAGTGAATGTGGAACACCAGGAAAGGAGAACAACAAATCTTCAGCTATGACCCTCTCAAGCCCCTCTTCATATTTGTTGAAAGGCCGTAGATAG 3072 0.4176 MHAISVVSSSICYPGILSDAHFGECLSLCEVNLHFAFLTWMTSTDNSLLHQGLIAYLFLSVRTSGPTRRSTKGQWTPEEEDEIIIDLVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPAINKEAWTQEEELALIRAHQIYGNRWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLIPHVGQPNQLMVSASSRLLCSGDDSSQKGIGEEVSECSQESASASCLPVSREMTRVVLHAREETKPNEYSSLGKEQSPSQASCSEPYYVSLDDVTISNSDIAREEASSSQFTEQKYSHEPGNSAGMDNGFQLHGLLSISSLDLGEELSLLQGDCIVSDENNDIVNAQFHTSVGLGIATSMAPTSMDSSKPEDMLIANEEYCRIIFSDAMNDGTFSSGDHSKGVDMVLSACTSNLLQSSEIQISDAGRTSAALKTCPTRSNNLIESSCCQSFPIVPSSLSDNDGRVSYTAEAGRIYGGDDQQFASNAHDSFIYPNDSSISPCIDIIDSAEMHDGPNIVNDALRLVPVNNFTCASDANQICNPTDEKEDVQTEQEDTGSLCYEPPRFPSLDIPFFSCDLIQHGGDMQQDFSPLGIRRLMMYSGNSPTPLMLWDSPSRDDSPDALLRSAAKTFTSTPSILKKRRRDLSPLSDKRIEKKLETDMTSTLTTHFSRLDVMFDDNEAQAANMLPPSSIQKNKNGASDDDKENCGPALKGEHVEGKNESTILRSKESEKDTGNNNSQDVNSRMETDVEASAAAEIGQQPSGVLIERDMNDLLLYSPNQIRFSLDRIHISSAKTPKNLNNRSLEAAPNQNIAPKSFHGAPGENSGDHTGNDAGFETFNIFGGTPFRRSIESPSAWKSPWFINTFLTSPRIDTEMSIEVLQVLLDVFCLNADHDFPPLTLLTYRQDFGYLMSPGDRSYDAIGWMKQVKEQTAAAYANAEEILEIDTPKAEDASGGAGDGDQEGRGPHDQPGNHCQLASSNALMERRVLDFSECGTPGKENNKSSAMTLSSPSSYLLKGRR 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1576 1023 MobiDBLite consensus disorder prediction 994 1023 - -
Lele27g1576 1023 MobiDBLite consensus disorder prediction 699 737 - -
Lele27g1576 1023 MobiDBLite consensus disorder prediction 245 266 - -
Lele27g1576 1023 Pfam Myb-like DNA-binding domain 72 119 IPR001005 -
Lele27g1576 1023 Pfam Myb-like DNA-binding domain 125 167 IPR001005 -
Lele27g1576 1023 CDD SANT 127 167 IPR001005 -
Lele27g1576 1023 FunFam Transcription factor MYB3R-2 126 192 - -
Lele27g1576 1023 MobiDBLite consensus disorder prediction 687 749 - -
Lele27g1576 1023 MobiDBLite consensus disorder prediction 999 1017 - -
Lele27g1576 1023 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 123 IPR017930 -
Lele27g1576 1023 SMART sant 124 172 IPR001005 -
Lele27g1576 1023 SMART sant 71 121 IPR001005 -
Lele27g1576 1023 MobiDBLite consensus disorder prediction 949 981 - -
Lele27g1576 1023 Gene3D - 126 181 - -
Lele27g1576 1023 Gene3D - 71 124 - -
Lele27g1576 1023 ProSiteProfiles Myb-like domain profile. 120 170 IPR001005 -
Lele27g1576 1023 SUPERFAMILY Homeodomain-like 70 166 IPR009057 -
Lele27g1576 1023 FunFam Transcriptional activator Myb isoform A 71 125 - -
Lele27g1576 1023 PANTHER MYB PROTEIN-RELATED 72 246 - -
Lele27g1576 1023 MobiDBLite consensus disorder prediction 814 833 - -
Lele27g1576 1023 CDD SANT 75 119 IPR001005 -
Lele27g1576 1023 ProSiteProfiles Myb-like domain profile. 78 119 IPR001005 -
Lele27g1576 1023 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 124 174 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1576 Lele-ChrLele27 21538713 21544404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1576 62 1001 MYB Transcription Factor Family AT4G32730 38.938 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele27g1576 Myb_DNA-binding 5.6e-17 CL0123