Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1574 ATGGCGACACCATCGTTGGACGAAGAAACCGCTAAGAAAGTGATACGACAAGTTGAGTTCTACTTCAGTGACAGCAACCTTCCTAGGGACAATTTTCTCAAGAAGTCTATAGGAGAAAGTGAAGATGGCATGGTTAGTTTGGCTTTGATTTGTTCTTTTACTCGAATGAGAAAACATCTCAATCTGGACGATGTAAAGCCGGATGAAGTCCCCGAAGATACTGTGAAGGCTGTTGCTGAAACTTTGAGAAAATCAGAATCACTTAAGATCTCCGAGGATGGGAAAAAAGTTGGCAGGACAACTGAACTTCTGAAACCAGAAGAGGTGATTGAGCAGGTGGACATCAGAACAATAGCTGCATCACCGTTTGAACATGATGTGAAGCGAGAAGATATTGAAGCATTCTTCGGTCAATCTGCCAAGGTTAATAGTGTCAGGCTTCCTCGTCATGTTGGAGACAAAAGATTCTTCTGTGGCACTGCTCTCATCGAGTTTGCAGAAGAACAAGATGTTGACAAAGTTTTGGGGCAAAAATTGGTCTATGCTGGAGCTGAGTTAGAATTGAAGTTGAAGAAAGACTTTGATGCAGAGAGAGCAAAGGAGTTAGAAGAGTATGAAAAATCTGGTGCACATATGGGTTCAAATCACCAGAATAACTCAAATGCTGACGCAGGCTACCCCAAGGGCTTAATTATTTCCTTCAAGCTAAAACGCATTTCAGATGATGTTCCTCTGGGACAAAATGGTCCTCATGAAGAAGCCAATGGCAACAGTAGTGTCTCTGACAAAGAGGAACAAAAACCCTCAGAAGGTGTTGTTGAGGAGGGTAATGAACAAAAGGTATCGGATAATACTGACAATGATAAAGAACACCAAGAGGTCAGTGAAGGAAATGAAGCTAAAGGTGAAGAAAAGATTCAAGAAAGTGAAGTAAAACTTTCAGCCGAAGCTTGCAGGGACAACATGGACGTTGTGTTACGTGAGGATTTGAAGGGTGTCTTTGAGAAGTTTGGTTCTGTGAAGTACGTTGATTTCAAGATTGGAGAAGAATCAGGATACATCCGGTTTGAAGAACCTGAAGCTGCTCAAAAAGCTCGTGCTGCCGCAGTTCTTGCTGAAAAGGGGGGTTTGGCTGTGAAGAATTTTATTGCTACTCTAGATCCAGTGTCTGGCGATGCTGAAAGGGAATACTGGAGCCTTCTCCGTGGTAATCAAGAAAAGCGCCGAGACAATTACAACACCCGAGGAAGGGGAGGAGGAAGGCACGGCAGAGGGGGGAAACATGGCCGCTCTAGAAGAGATAATGGATCTGCAATGGGTCGCCCAAATAAAGCTCAGAGAGTTAGGGCGGCTTAA 1356 0.4381 MATPSLDEETAKKVIRQVEFYFSDSNLPRDNFLKKSIGESEDGMVSLALICSFTRMRKHLNLDDVKPDEVPEDTVKAVAETLRKSESLKISEDGKKVGRTTELLKPEEVIEQVDIRTIAASPFEHDVKREDIEAFFGQSAKVNSVRLPRHVGDKRFFCGTALIEFAEEQDVDKVLGQKLVYAGAELELKLKKDFDAERAKELEEYEKSGAHMGSNHQNNSNADAGYPKGLIISFKLKRISDDVPLGQNGPHEEANGNSSVSDKEEQKPSEGVVEEGNEQKVSDNTDNDKEHQEVSEGNEAKGEEKIQESEVKLSAEACRDNMDVVLREDLKGVFEKFGSVKYVDFKIGEESGYIRFEEPEAAQKARAAAVLAEKGGLAVKNFIATLDPVSGDAEREYWSLLRGNQEKRRDNYNTRGRGGGRHGRGGKHGRSRRDNGSAMGRPNKAQRVRAA 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1574 451 FunFam La protein 2 6 106 - -
Lele27g1574 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 176 IPR000504 GO:0003723
Lele27g1574 451 SUPERFAMILY "Winged helix" DNA-binding domain 6 102 IPR036390 -
Lele27g1574 451 Gene3D - 6 106 IPR036388 -
Lele27g1574 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Lele27g1574 451 Pfam RNA binding motif 325 417 IPR014886 GO:0003723
Lele27g1574 451 PANTHER LUPUS LA PROTEIN-RELATED 10 299 IPR045180 -
Lele27g1574 451 SUPERFAMILY RNA-binding domain, RBD 108 193 IPR035979 GO:0003676
Lele27g1574 451 SMART rrm1_1 321 380 IPR000504 GO:0003723
Lele27g1574 451 SMART rrm1_1 117 189 IPR000504 GO:0003723
Lele27g1574 451 Gene3D - 311 417 IPR012677 -
Lele27g1574 451 CDD LA_like_plant 10 99 - -
Lele27g1574 451 ProSiteProfiles xRRM domain profile. 304 430 IPR014886 GO:0003723
Lele27g1574 451 MobiDBLite consensus disorder prediction 403 417 - -
Lele27g1574 451 MobiDBLite consensus disorder prediction 242 309 - -
Lele27g1574 451 SMART la 8 100 IPR006630 -
Lele27g1574 451 Pfam La domain 14 84 IPR006630 -
Lele27g1574 451 MobiDBLite consensus disorder prediction 257 309 - -
Lele27g1574 451 Gene3D - 109 207 IPR012677 -
Lele27g1574 451 MobiDBLite consensus disorder prediction 403 451 - -
Lele27g1574 451 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lele27g1574 451 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lele27g1574 451 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lele27g1574 451 ProSiteProfiles La-type HTH domain profile. 4 109 IPR006630 -
Lele27g1574 451 SUPERFAMILY RNA-binding domain, RBD 327 413 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1574 Lele-ChrLele27 21526203 21529695 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0536 01 3207786 3209958 Lele27g1574 27 21526203 21529695 CCT
Lele02g0531 02 3194282 3201667 Lele27g1574 27 21526203 21529695 CCT
Lele03g0545 03 3239231 3241419 Lele27g1574 27 21526203 21529695 CCT
Lele04g0550 04 3334253 3336560 Lele27g1574 27 21526203 21529695 CCT
Lele25g0504 25 3177991 3181930 Lele27g1574 27 21526203 21529695 hybridization
Lele26g0522 26 3301438 3313126 Lele27g1574 27 21526203 21529695 hybridization