Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1559 ATGCAAAAGAAAGAGAAGGAAGCGAGGAAAGAAGGGAGGGATAAGGAAATGGAAGGAAGTGGGACAAAAGAGGAAACCCTACCTCCTGGCTTTCGATTTCATCCCACAGACGAAGAACTCATCACAAGCTATCTCATCAACAAGATCTCTGATTCTTCTTTTACTGCTCGAGCTGTTACTGATGTCGATCTCAACAAATGCGAGCCATGGGAGCTCCCTGGGAAGGCGAAGATGGGAGAGAAAGAGTGGTACTTCTTCAGTCTGAGAGATCGGAAATACCCGACGGGCGTCAGAACCAACAGGGCGACCAACACAGGCTACTGGAAGACCACCGGAAAAGACAAGGAAATCCTTAACAGTGATACCTCGGAGTTGGTCGGCATGAAAAAGACTTTGGTTTTCTACAAAGGCCGAGCCCCCAGAGGTGAGAAATCCAACTGGGTCATGCACGAATACCGTATCCACTCCAAATCCTCCTTCAGGCTCCATAACAAGCAGGATGAATGGGTGGTTTGTAGAGTGTTCCAGAAGAGCGGTGGAGCTAAAAAGTACCCTTCCAATCACACAAGAGGGGTGAATCCATATAGCCTGGACATAGCTCCTAACATTGTGGGACCTTCAATGATGCAAATGGCGGATCCTAATTCTGGTCACTTCCTCTACGGAAGGAACTATGTCAACAGTGCTTCTGACCTAGCAGAGGTCGCTAGGGTTTTGAGAGCAGCAGGAGGAGCTGCTTCAACCACTGGTCTTAACCTACCGATGCAACCACATGCTCAGCTTAACTATCCTGCGCCACCTGCAGCCGGAGGGTTTACAATTTCTGGCCTCAACTTGAATCTCACAGGAGGAGGAGGAGCCGCAACCACCGGGCAACCTGTTTTCCGGCCGATGAACCCACATGATGTGGGCTCCACCATGATGACAGCAGGTGGCAGTTCTCTTAATGGAGGAGATCATCATGTAGGGTACGGGCATGCAGAAATGAGCAACCCTAATAATGTTGGCCCAAGCAACAGGTTCATTGGGATGGAGCATTGTGTGGATTTAGATAACTACTGGCCTTCCTACTAA 1074 0.4935 MQKKEKEARKEGRDKEMEGSGTKEETLPPGFRFHPTDEELITSYLINKISDSSFTARAVTDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSDTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSFRLHNKQDEWVVCRVFQKSGGAKKYPSNHTRGVNPYSLDIAPNIVGPSMMQMADPNSGHFLYGRNYVNSASDLAEVARVLRAAGGAASTTGLNLPMQPHAQLNYPAPPAAGGFTISGLNLNLTGGGGAATTGQPVFRPMNPHDVGSTMMTAGGSSLNGGDHHVGYGHAEMSNPNNVGPSNRFIGMEHCVDLDNYWPSY 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1559 357 Gene3D NAC domain 36 180 IPR036093 GO:0003677|GO:0006355
Lele27g1559 357 MobiDBLite consensus disorder prediction 1 33 - -
Lele27g1559 357 SUPERFAMILY NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
Lele27g1559 357 ProSiteProfiles NAC domain profile. 27 177 IPR003441 GO:0003677|GO:0006355
Lele27g1559 357 MobiDBLite consensus disorder prediction 1 22 - -
Lele27g1559 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 204 - -
Lele27g1559 357 FunFam NAC domain-containing protein 100-like 36 181 - -
Lele27g1559 357 Pfam No apical meristem (NAM) protein 28 154 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1559 Lele-ChrLele27 21407629 21409253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1559 23 357 NAC Transcription Factor Family AT2G24430 52.676 2.81e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele27g1559 NAM 7.6e-40 No_clan