Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1541 ATGCAACAGAGGCTCAAGCTTCAGCAACAGCAAGCCCTCATGCAGCAAGCCCTGCTTCAGCAACAGCAGATGTATCACCCAGGGATGCTAGCCGCTACTATGTCCCAGATTGAGCCTGTTCCAAGTGGAAATTTGCCTCCAGGATTTGACACTTCTACATGCCGCAGCATTTATGCAGGAAATATTCATGTAAATGTTACTGAAAAACTTCTTGCTGAAGTCTTTCAAAGTGCTGGTCCTCTCGCTGGATGCAAGCTCATAAGGAAAGAGAAGTCCTCGTATGGTTTTGTGGATTACCATGATAGAGCATCTGCAGCCCTTGCAATAATGACATTGCATGGACGCCAACTATATGGTCAGGCACTTAAGGTGAATTGGGCATATGCCAATACCCATAGGGAGGATACTTCAGGGCACTTCAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAAGGTTATGTGGGATCTCAAAACTGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCAGCAGGATGCTCAAAATGCCATCAATGATATGAATGGTAAGTGGCTGGGAAATAGGCAAATAAGATGCAACTGGGGAACCAAGGGCGCTGGTATGAGTACCAATGAGGAGAAGAACAATGACACTCAAAATGCTGTTGTGCTTACAAATGGGTCTTCAGATGGAGGTCAGGAATATAGTAATGAGGATGCTCCTGAAAACTGTCCCGCCTTTACCACCGTTTACGTTGGCAACCTTCCCCATGATGTAACGCAAAATGAACTCCACTATCAGTTCCACGCATTGGGGGCTGGAGTAATTGAGGAGGTTCGAGTTCAAAGGGATAAAGGTTTTGGATTTGTAAGATACAACACTCATGAAGAAGCAGAGTTGGCCATTCAGATGGCTAATGGTAGAATACTTCGTGGGAAAACAATGAAGTGTTCATGGGGTAACAAGCCAACACCTCCTGGAACAGCTTCAAACCCACTGCCTCCTCCTACACAACCTTATCAAATGCTTGCCACAACAGGGATGAACCAAGGCTATTCTCCTACTGAGTTATTGGCTTATCAGCGCCAACTGGCCTTAAGTCAGGCTGCTGTATCTGGCCTTTCAGGTCAAGCTCTTGTGCATATGACTGGTCAACATGGCCTTGCTGCTGCCTCCATTGGCTTAAGCTCTGGGGCATCCCAAGCCATGTATGATGCATATTCTGGTAATTCTTCAAGGCAGCACCTCATGTACTATCGTTAA 1305 0.4536 MQQRLKLQQQQALMQQALLQQQQMYHPGMLAATMSQIEPVPSGNLPPGFDTSTCRSIYAGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANTHREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAKVMWDLKTGRSKGYGFVSFRDQQDAQNAINDMNGKWLGNRQIRCNWGTKGAGMSTNEEKNNDTQNAVVLTNGSSDGGQEYSNEDAPENCPAFTTVYVGNLPHDVTQNELHYQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAELAIQMANGRILRGKTMKCSWGNKPTPPGTASNPLPPPTQPYQMLATTGMNQGYSPTELLAYQRQLALSQAAVSGLSGQALVHMTGQHGLAAASIGLSSGASQAMYDAYSGNSSRQHLMYYR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1541 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Lele27g1541 434 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 46 339 - -
Lele27g1541 434 CDD RRM3_TIA1_like 262 336 - -
Lele27g1541 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 336 IPR000504 GO:0003723
Lele27g1541 434 Gene3D - 1 138 IPR012677 -
Lele27g1541 434 SMART rrm2_1 141 214 IPR003954 GO:0003676
Lele27g1541 434 SMART rrm2_1 263 332 IPR003954 GO:0003676
Lele27g1541 434 CDD RRM2_PUB1 141 215 - -
Lele27g1541 434 SUPERFAMILY RNA-binding domain, RBD 134 225 IPR035979 GO:0003676
Lele27g1541 434 SUPERFAMILY RNA-binding domain, RBD 251 345 IPR035979 GO:0003676
Lele27g1541 434 FunFam Nucleolysin TIAR-like protein 1 138 - -
Lele27g1541 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Lele27g1541 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Lele27g1541 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 330 IPR000504 GO:0003723
Lele27g1541 434 FunFam Nucleolysin TIAR-like protein 139 237 - -
Lele27g1541 434 Gene3D - 239 340 IPR012677 -
Lele27g1541 434 SUPERFAMILY RNA-binding domain, RBD 40 133 IPR035979 GO:0003676
Lele27g1541 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Lele27g1541 434 Gene3D - 139 218 IPR012677 -
Lele27g1541 434 FunFam Oligouridylate-binding protein 1C 239 340 - -
Lele27g1541 434 SMART rrm1_1 141 214 IPR000504 GO:0003723
Lele27g1541 434 SMART rrm1_1 56 125 IPR000504 GO:0003723
Lele27g1541 434 SMART rrm1_1 263 332 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1541 Lele-ChrLele27 21303298 21320124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1541 141 339 Eukaryotic Initiation Factors Gene Family AT1G22760 24.057 5.57e-11 62.8