Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1535 ATGGCGGTGGAGCTCATGGGGTTTCCGAAAATGGACGAGCAGAAAGCAATTCAGGAGACTGCATCGGAGGGATTAAAGGGCATGGAGAATCTAATTCGTCTTCTCTCCCACAAACCCAATCTCGTCGATTGCTCTAATCTCACCGATGTTACCGTTTCTAAGTTTAAGAAGGTCATTTCTCTTCTAAATCGCACTGGCCATGCCCGGTTCAGAAGAGCGCCAATTCCCTCCTCTTCTAGCACGTCTCCTCCTACATCAAAGTTGCCGCCGCCACCATCATCCGCTGCGGCCTCGTCTGCGAACATTTCGCAATCGCAAATTCCGAATCTATCACCGGCGCAGTTCGCCTCCCCGGCGCCGATCGTAAATACTTTAACCGTTCATCACGCTCCGATCAACAACAGAACTGCTCCATCCGGTTTCGTTCCGGCTCATTCACAGTCTCTGACTCTCGATTTCACAAAACCTAATTTATTGAGCTCCAACACGAAATCCCTAGAGATGGAGTTCTCGAAGGAAACCTTCAGCGTGTCTTCAAACTCATCTTTCATGTCGTCAGCCATCACCGGCGACGGCAGCGTATCGAATGGCAAACAGGGATCGTCGATCTTCCTTACACCGGCAGCACCAACGGTCTCTGGCAACGGGAAGCCACCCCTGTCGACGGTACCGACAAAAAAGCGATGCCACGACCACCATGAGCACTCCGATGACCTATCCGGCTCCAGCAAGTGCCACTGCACAAGAAGAAGGAAGAATCGGATGAAGAAGGTGGTAAGAGTGCCGGCGATTAGTTCAAAGGTCGCGGATATTCCGCCGGACGAGTTCTCGTGGAGGAAGTACGGTCAGAAGCCGATCAAGGGATCACAGTATCCAAGGGGTTACTACAAGTGCAGTACGGTGAGAGGGTGTCCGGCGAGGAAACACGTTGAGCGGGCCCCGGATGATCCGGCGATGCTGATCGTAACCTATGAGGGGGAGCACCGCCACGCATTGCAGGCCGCTATGCAGGATAACGGAGCTGGGGGTGTTGGGTTGGGAGTTGACGGGGATGAATTGTGA 1062 0.533 MAVELMGFPKMDEQKAIQETASEGLKGMENLIRLLSHKPNLVDCSNLTDVTVSKFKKVISLLNRTGHARFRRAPIPSSSSTSPPTSKLPPPPSSAAASSANISQSQIPNLSPAQFASPAPIVNTLTVHHAPINNRTAPSGFVPAHSQSLTLDFTKPNLLSSNTKSLEMEFSKETFSVSSNSSFMSSAITGDGSVSNGKQGSSIFLTPAAPTVSGNGKPPLSTVPTKKRCHDHHEHSDDLSGSSKCHCTRRRKNRMKKVVRVPAISSKVADIPPDEFSWRKYGQKPIKGSQYPRGYYKCSTVRGCPARKHVERAPDDPAMLIVTYEGEHRHALQAAMQDNGAGGVGLGVDGDEL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1535 353 SUPERFAMILY WRKY DNA-binding domain 270 332 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele27g1535 353 Pfam WRKY DNA -binding domain 274 330 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele27g1535 353 MobiDBLite consensus disorder prediction 199 220 - -
Lele27g1535 353 Gene3D WRKY domain 257 332 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele27g1535 353 ProSiteProfiles WRKY domain profile. 267 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele27g1535 353 MobiDBLite consensus disorder prediction 199 245 - -
Lele27g1535 353 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 335 IPR044810 GO:0003700
Lele27g1535 353 FunFam WRKY transcription factor 65 256 333 - -
Lele27g1535 353 MobiDBLite consensus disorder prediction 224 245 - -
Lele27g1535 353 Pfam Plant zinc cluster domain 226 270 IPR018872 -
Lele27g1535 353 SMART WRKY_cls 272 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele27g1535 353 MobiDBLite consensus disorder prediction 70 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1535 Lele-ChrLele27 21247003 21248617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1535 1 339 WRKY Transcription Factor Family AT2G24570 57.880 4.62e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele27g1535 WRKY 2.1e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0541 25 3447364 3448875 Lele27g1535 27 21247003 21248617 hybridization
Lele26g0558 26 3551281 3552795 Lele27g1535 27 21247003 21248617 hybridization