LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele27g1528	ATGATTTTCCCCTTTTTGTGCTTGGGGATATGGAGGAGCAAGAATTCTGAAGGGTTGGTCTCCTTTTTCATAGTTTCTCTGTGGATGATGCTTACCATTGCTGCTGTTTCCGTATTTAGATTGAATAAGCAACAGATGAATGATTACTCTGGTAAACAAGCCATAGATGGGATGGTAGTACCTAAAAAGGGGATGGCTCATGTATTTAGAGATACCAACGCTAGGGACCGTAATGGCCAGTTCTGCAGCCGACCTGGGTGCAGCAGTAGAGTGAATTCTCCTAAGGGTGCTCAATTTGGTTCATCTGAAAAGGGTAAATCTTCGAGGCCTCCAATCCGATCTTCAAGTCGTAAGGAAGCAATCGGACGTTCCTCTAAAACTTTACCAGGATCTTATAACCCAGGAAAATCCCCTATGGAGCCCCGGAAAACATTATCTTGTCAGTCAGAGACTGTTCCATGTGAGACGACTAGTTTACAGGATGAAACAGAGATTTCTGAGCTCATCCCACCACCTGAAAAAATTCAAAGAGGGCCTCAAGCTGAAGTGGGAAGTTCAGAGTCTGCTAATATCATATCAATGGAAGTAGGAAGCTCTAGTGTAGCACCATCGAACACAACATATAGGAGGAATCTTCGTCAAAAGCCTGGATTCAATGGTCAAGAATTTAAAAGCTCTGGCTCAGTGACACGCACTGGAGGTAGCAGGTATGGGTTGAGGAACCTCAGATGCAATTCTATATCTGATGTCATCCCTTCAGGTTGTTCATCATCAGATTCAACCCCGAATAGAAGGAAAGATGTGATGAAAACGAGAAACTGTGAAGGAGAAAGTAGTTCTACTGCCAGAGGTAAGAAGACGAGTGGTTCTTCAATGGACGGACAAAATTCAGGCCCCAGAAATGGTATATCTATATCAGATTCAAGAAGAACCAGAAACTTTGCTCCTCACAGGGATAACAACAACATTGGATCGGTTAGAACTAGAAGATCTTTCAGTGGTCATGCCAGGGGAAGGCTTCCTAGCCAAGCAAATGAAAACCCTGCTGCACCACCCAATGAGTCCCCTATTACTATATCGTCTTTGCCTCATTCCAGTGACCTTAGTGCTCATGATTTATTACATCATTCCTCGTTGGAGACTCCCCTCAGAAGTCCTAGATCTTACAGTAGACCAGGTAGTAGCAGTGAGCGGTTATTTGGCCTTTTGCCTCCATCTCCTTCAGAATATGGGATCACTCGATCTCTCCTGAACCGAGACAGCTTTAGACGCTACAACATGGATGGTATTGCAGAGGTATTATTGTCTCTGGAGAGGATTGAACAAGACGAAGATCTTACAAACGAGCAAATTCTTTTACTGGAGACCAACTTGTTCCTTAATGGACTAAACTTCTATGATCAACATAGAGACATGCGATTGGATATTGATAACATGTCATACGAGGAACTATTGGCTTTGGAAGAGAGGATAGGTTCTGTGAGCACAGCTCTAACAGAGGAAGCACTCTCAGAATGCCTAAAGAGAAGCTTCTATCAACCTGCCACTTCAGATGATGCAGCCGAGAGCTGCAATGAGAACAAGGATGGCATAAAATGCAGCATCTGCCAGGAGGAATATGTGGAAGCAGAGGAAGTGGGGAGTCTGCAATGCGAGCACAGATATCATGTGGGGTGCATACAGCAATGGCTGCGCCTCAAGAACTGGTGTCCTATTTGCAAAGCCTCTGCGGCACCATCGCATTCGTCTTCTTGA	1755	0.4456	MIFPFLCLGIWRSKNSEGLVSFFIVSLWMMLTIAAVSVFRLNKQQMNDYSGKQAIDGMVVPKKGMAHVFRDTNARDRNGQFCSRPGCSSRVNSPKGAQFGSSEKGKSSRPPIRSSSRKEAIGRSSKTLPGSYNPGKSPMEPRKTLSCQSETVPCETTSLQDETEISELIPPPEKIQRGPQAEVGSSESANIISMEVGSSSVAPSNTTYRRNLRQKPGFNGQEFKSSGSVTRTGGSRYGLRNLRCNSISDVIPSGCSSSDSTPNRRKDVMKTRNCEGESSSTARGKKTSGSSMDGQNSGPRNGISISDSRRTRNFAPHRDNNNIGSVRTRRSFSGHARGRLPSQANENPAAPPNESPITISSLPHSSDLSAHDLLHHSSLETPLRSPRSYSRPGSSSERLFGLLPPSPSEYGITRSLLNRDSFRRYNMDGIAEVLLSLERIEQDEDLTNEQILLLETNLFLNGLNFYDQHRDMRLDIDNMSYEELLALEERIGSVSTALTEEALSECLKRSFYQPATSDDAAESCNENKDGIKCSICQEEYVEAEEVGSLQCEHRYHVGCIQQWLRLKNWCPICKASAAPSHSSS	584

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele27g1528	584	MobiDBLite	consensus disorder prediction	142	164	-	-
	Lele27g1528	584	SUPERFAMILY	RING/U-box	532	578	-	-
	Lele27g1528	584	MobiDBLite	consensus disorder prediction	346	367	-	-
	Lele27g1528	584	MobiDBLite	consensus disorder prediction	274	310	-	-
	Lele27g1528	584	MobiDBLite	consensus disorder prediction	210	262	-	-
	Lele27g1528	584	Pfam	Ring finger domain	532	574	IPR001841	-
	Lele27g1528	584	FunFam	E3 ubiquitin-protein ligase arkadia	495	579	-	-
	Lele27g1528	584	MobiDBLite	consensus disorder prediction	80	186	-	-
	Lele27g1528	584	SMART	ring_2	533	573	IPR001841	-
	Lele27g1528	584	ProSiteProfiles	Zinc finger RING-type profile.	533	574	IPR001841	-
	Lele27g1528	584	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	494	579	IPR013083	-
	Lele27g1528	584	MobiDBLite	consensus disorder prediction	210	403	-	-
	Lele27g1528	584	MobiDBLite	consensus disorder prediction	80	109	-	-
	Lele27g1528	584	MobiDBLite	consensus disorder prediction	381	395	-	-
	Lele27g1528	584	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	137	578	IPR045191	GO:0061630

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele27g1528	Lele-ChrLele27	21206669	21209995	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele27g1528	412	577	C3H Transcription Factor Family	AT2G15530	41.566	7.61e-36	141

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele01g0588	01	3458821	3461920	Lele27g1528	27	21206669	21209995	CCT
	Lele02g0580	02	3473484	3476685	Lele27g1528	27	21206669	21209995	CCT
	Lele03g0591	03	3485374	3489353	Lele27g1528	27	21206669	21209995	CCT
	Lele04g0596	04	3617856	3621033	Lele27g1528	27	21206669	21209995	CCT
	Lele25g0549	25	3486098	3490839	Lele27g1528	27	21206669	21209995	hybridization
	Lele26g0565	26	3591178	3593374	Lele27g1528	27	21206669	21209995	hybridization