Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1523 ATGTTCTCTAGCAGCCAGCTTGATGCCACTGCCGCCTTCTCAGGCGGCGGATTCATGGCCACAGAGTCTACCCAGATCAACGATTCATCTCCGTTACCGGCCAAAAGTCGTGAGACTCAGGGTTTAGCTCCGGTAACAGTGAAGCAGATAAGCGAAGCCTCTCAATCCGGCGATGAAAAGTCGAATTTCGTAATCAATGGCGTGGATGTTACCAATGTAACCTTGGTTGGTATGGTGTTTGAGAAAGTTGACAGAAACACTGATGTTAGTTTTGTTCTAGATGATGGAACAGGAAGGATCAAATGTCGAAGATGGGTGAATGAGCCTTTTGATACAAAGGAAATGGAAGAAATACGAGATGGTATGTACGTTCATGTATATGGGCATTTGAAAAGCTTTCAAGATGTGAAACAGCTCGTTGCTTTCTCAATCAGGCCAGTGATGAGTTTTGATGAGATTTCTTTGCACTTTATTGATTGCATACATAATCATCTTCACTTCAAAGTAAAGGTTGAAGGAGTTACTCCTGCACGTCCTCCATCTATAAACTCATCTCATGCAACAAATGGAAATCAAGTGCCATCATCTAATCCATTATATGCGCAATATAGCATGGATGGGCTTAAGGACTGTGATAAATTAGTCCTTGATTATCTGAATCAGCATTCAGACATGTCTGATGAAAGGGGGATACATGTTAATGAGCTGTCTCGAGAGCTTAAACTTCCATTGGACAAGATCATGTTGTCACTGAAGACTCTTGGCGACGATGGACTAGTATACTCCACCATTGATGACAATCATTACAAGCAAGCTTGA 819 0.4212 MFSSSQLDATAAFSGGGFMATESTQINDSSPLPAKSRETQGLAPVTVKQISEASQSGDEKSNFVINGVDVTNVTLVGMVFEKVDRNTDVSFVLDDGTGRIKCRRWVNEPFDTKEMEEIRDGMYVHVYGHLKSFQDVKQLVAFSIRPVMSFDEISLHFIDCIHNHLHFKVKVEGVTPARPPSINSSHATNGNQVPSSNPLYAQYSMDGLKDCDKLVLDYLNQHSDMSDERGIHVNELSRELKLPLDKIMLSLKTLGDDGLVYSTIDDNHYKQA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1523 272 Gene3D - 34 168 IPR012340 -
Lele27g1523 272 SUPERFAMILY "Winged helix" DNA-binding domain 205 270 IPR036390 -
Lele27g1523 272 Gene3D - 202 272 IPR036388 -
Lele27g1523 272 SUPERFAMILY Nucleic acid-binding proteins 43 167 IPR012340 -
Lele27g1523 272 MobiDBLite consensus disorder prediction 22 41 - -
Lele27g1523 272 FunFam replication protein A 32 kDa subunit A-like 35 169 - -
Lele27g1523 272 CDD RPA2_DBD_D 72 165 - -
Lele27g1523 272 PIRSF RPA32 1 272 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele27g1523 272 Pfam OB-fold nucleic acid binding domain 73 146 IPR004365 GO:0003676
Lele27g1523 272 PANTHER REPLICATION PROTEIN A-RELATED 6 270 IPR040260 -
Lele27g1523 272 FunFam Replication protein A 32 kDa subunit 203 272 - -
Lele27g1523 272 Pfam Replication protein A C terminal 183 267 IPR014892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1523 Lele-ChrLele27 21164029 21166913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1523 1 270 Core DNA Replication Machinery Family AT2G24490 47.312 2.70e-88 262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0555 25 3531703 3534759 Lele27g1523 27 21164029 21166913 hybridization
Lele26g0570 26 3629969 3633483 Lele27g1523 27 21164029 21166913 hybridization