Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1516 ATGACAGTGTATTGGCGCGGAGCAAGTGGACGGAAGAGATCGATCCAAGCATCTCGGATCGACTTTCTTCCTCGAGGGTTCATTCTTTCTCAGGAAATAAAAGCAATGGCTGATGACAAAGGAGTTGGAGAAGCTGAAAGCAAACAGACAAGTCCTACTGCCGCTGCTAGTAGAAAGAAGCGCCAGGGATTTATTTCCCGACTTTGGAATGGAATATTTAGATTACATGGAGATGATTTCGAAAAGAGACTGCAATACATTTCTAAAGAAGAAGCCGCTGTTTTGACTAGAATGAACAGGAGATCTCAATCTTGGAGGCAAACAACTCGGCATCTTATTGTGCTTTCGGTTATATTTGAGGTCATTGCTGTAGGTTATGCTATTATGACAACAAGATCGGTGGATATGAATTGGAAGATGAGGGCATTCCGGGTCTTGCCAATGTTTCTTTTGCCCGCCTTTTCATTTGCTGCTTATTCAGCAGTTGTCAGCTTTACAAGGATGTGTGATCGCAGGGACCAGAAAATTCTCGAAAGGCTTCGAGCTGAAAGGCAAGCAAAAATTGATGAGCTCAAAGAGAAGACAAATTATTACACTACTCAACAGCTCATTCAGAGATATGATCCAGACCCGGCAGCAAAGGCAGCGGCAGCAACTGTTTTGGCATCTAAGTTGGGTGCAGATTCAGGCTTGAAAGTTTATCTAGGGGATGAATCAAACCACAGTGCTTCAACAGGGATGAGCAATGATGTTGAACTTGTACAAGCAAGTGGACTCCGAAATCGAAAACAAATGCAGTCTAGATATACTACTCCAGGGACAGCTACACCAAAGCTTCCTGTTCCTGATCAACAAATTGTTGGTACTAGTAGAACTGAAGAAGGTCCGACTTCTGAGCATAACCAGCTTGTAGTTGTAGAGCACCACCAACCTCAGAGTTCATCCACAAATGATGGAGGATGGATTGCTCGTATTGCAGCATTGCTCGTTGGTGAGGATCCAACCCAGTCTTACGCACTTATATGTGGTAACTGCCACATGCATAACGGTCTTGTTCGGAAGGAGGATTTCCCTTTCATCACTTACTATTGCCCGCACTGTCAAGCCTTGAACAAGCCTAGGAATTCAGATGAGGGTGTCTCTACTTTGAATTCCCCAAAAATGCAGCTTCGAAAAGCAGACGTTGTTGATGCAGTTAAAAATACCTTGGAGTCTGCTGGTGACATATTAATCACAAACAATAGTCCCGCTGATCCTCCTGCCGAGATTGAGGAAATATCTGAAAGGCCAGATTTGGGGGAGAAAGCTAGCTAA 1314 0.4406 MTVYWRGASGRKRSIQASRIDFLPRGFILSQEIKAMADDKGVGEAESKQTSPTAAASRKKRQGFISRLWNGIFRLHGDDFEKRLQYISKEEAAVLTRMNRRSQSWRQTTRHLIVLSVIFEVIAVGYAIMTTRSVDMNWKMRAFRVLPMFLLPAFSFAAYSAVVSFTRMCDRRDQKILERLRAERQAKIDELKEKTNYYTTQQLIQRYDPDPAAKAAAATVLASKLGADSGLKVYLGDESNHSASTGMSNDVELVQASGLRNRKQMQSRYTTPGTATPKLPVPDQQIVGTSRTEEGPTSEHNQLVVVEHHQPQSSSTNDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLVRKEDFPFITYYCPHCQALNKPRNSDEGVSTLNSPKMQLRKADVVDAVKNTLESAGDILITNNSPADPPAEIEEISERPDLGEKAS 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1516 437 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 58 387 IPR040115 GO:0071786
Lele27g1516 437 MobiDBLite consensus disorder prediction 422 437 - -
Lele27g1516 437 Coils Coil 174 197 - -
Lele27g1516 437 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 321 371 IPR019273 -
Lele27g1516 437 MobiDBLite consensus disorder prediction 259 283 - -
Lele27g1516 437 MobiDBLite consensus disorder prediction 410 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1516 Lele-ChrLele27 21112488 21116978 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0561 25 3568232 3573022 Lele27g1516 27 21112488 21116978 hybridization
Lele26g0575 26 3656636 3665724 Lele27g1516 27 21112488 21116978 hybridization