Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1515 ATGAGTAGGCCAACTACAAGAAGTAAAAATAAAAGGCAAAGACAAGTGGATGATGGTGCTAGCACTTCTGAAATATGGAGGAAAATTCATGAAACAGGTGTGGTAACTGATGATGACACAAATCAACTTTATATGATTTGGAAGCCAATCTGTTCAAGCTGCCGTGTCAATACCAAAGACAACCCTAATTGCTTTTGTGCGTTGGTTCCACCTCCCAATGGAAACCGGAAATCTGGCTTATGGCAGAAGATATCAGGTATTATAGACAATCTTGGGCCTGACCCAACCAAGGACCTTCGTGCATATGCTAATTCACCTGCTGGTCTTACAAATCTTGGGGCCACGTGCTATGCCAACAGCATACTGCAGTGCTTATACATGAATAAATGTTTCCGGGAAGGCATATTTTCTGTAGAACCTGATCTTTTGCAACAGCAGCCTGTGTTAAATCAACTGGTGCGGCTTTTTGTACAGTTGCACATTAGTAAAAGGGCTTTTGTGGATTCATTTCCGTTTGTCAAAACACTGGAGTTAGATAATGGAGTTCAGCAGGATAGCCATGAGTTTCTTACATTGCTTTTGTCTTTGCTTGAGTGTTGTCTAAGCCATTCTGAAGTTCCTAAAGCAAGAACAGTAGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCATGTGACAACCTGCTCACAATGTGGAAGAGACTCTGAAGCATCTTCTAAAATGGAAGACTTCTATGAGCTGGAGTTAAATGTTAAGGGATTTAAAAGTTTAGATGAGAGCCTGAATGATTATCTTGCTGCGGAGGAGCTTTGTGGGGATAATCAATATTTTTGTGCATCGTGTAAAACAAGAGTGGATGCTACTCGTAGCATCAAGCTGCGCACATTACCTGGTGTACTTAATTTTCAACTTAAACGTTGTATCTTCCTTCCAGAGACTACAACAAGGAAGAAAATTACTTCTGCATTTTCATTTCCAGCTAAGCTTGACATGCAGCCTAGATTGTCTGAGCCATCTCAGTCTGAATTGATATATGACTTATCAGCTGTACTGATTCACAAGGGAACTACTGTTAATAGTGGCCATTATGTAGCTCACATCAAGGACGAGAATACTGGGCAATGGTGGGAGTTTGATGATGAGCATGTCACTAAATTAGGCTGTCATCCATTTGGTGATAAATCTTCAAATTCTATGGCAAAATCCGTTAGGACTGATCCCATTCATTCTGATGCCTCTGAAGTGAGGATAGCTGACAGTAATGGAAATGGTCTAGATGCCTCTCACTCACAATCTTCTCTTGTGGAGACATTTTCATCTAGCGATGCATACATGTTGATGTACATTCTTAAGCATACCAAAAATGTAGTCAAAATGGGGGATGTGCTCAGCAGTGGTGATGCTGTTCCTGCACAAGATAGTTTTCCTCTTCTATCTCATCTTTTTGATGAGATTCAGAACCTTAATGCTTCATATGTTGATGAGTGTGCACAGTACAATCAAAGGAAAGAGTTGGAACTAAGTCGAATTAATGAAAGGAGACAAGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTTCAACCACTTGAGCAACCATTTTATTGGATTTCTAGTGAATGGCTTCGCCAGTGGGCTGACAACATTAGTCCAAGCACTCTTGACAATACATCCATTCAATGCTCACATGGGAAAGTTCCTGTATCCAAGGTTACTTCAATAAAGCGATTGTCCAATAAAGCATGGGATACATTGTTTACAAAGTATGGTGGGGGGCCTACACTGTCCCATGGTGATTGCTGTTGGGATTGTCTTATTGATGGAGCTCACTCTGTGGTGTCAGCTGACACCTATCGGGACCGAAGAGAATCAATGAAGCAACTTGCACGGGACATTCTTGACGGAAATTGTCCAGATGGAAAGTATTACGTATCTAGACCATGGTTGCAGCAGTGGTGGAAAAGAAAAGTACTTGATGCTCCATCTGAAGCTGATGCTGGACCAACAGCAACAATTAGTTGCCCGCATGGGCAACTTTTACCTGAGCAAGCTCATGGTGCTAAGCGGGTGCTTGTTCCTAAGAGTCTTTGGCACTTCTTATATGAAGATGCTCTTTCTGTAAAACCTGATGATGCTTTGGGTTGCCCAGCACTTCCTTCAGACTCAATGCCTTGTTCCCAATGCAGTGATGAATTATCTGAAGTAGCATGCTTGGAGGACTCTTTAAGATTAGTGAAGCAAGTGCAACGTCAGAATCATGAGAAACTATTACTGGCTAAAAGTATGCCACTCTCATTGCATTGGAAATATTTCCTAGTGCCTTCTTCATGGATTTCAAAATGGAGAAGTTACATGAGTCCATCCGTCAAGAATTCAGACAAACCTGACACTTTAGATGGGATAATCAATTCCCTTATGTGTGTAAAGCACTCTCTCCTTGTGGAAAAGCCTCCAGAACTTGTTTTCAGACGTGGTGCTATAGTCCAGCAAGAATCTTCTGCAGGTGGTTTAACTATGATATCTGAGAACGATTGGAAATGCTTTTGTGAGGAATGGGGTGGTACTGAGACAAAAAGTATATCAGCAACAATTGAGAATACCGGTGATTCCGAGAATATTTTGACTGAATTCAGCTCAGAGACACAGATATGTGAGGATCAGTTGAATGATAAAGTGAATAATGATAGCGGGACTAGACGGCTGGTGATTAAGACTTGTCCAGAGATTTGTGAAAGTTGCATTGGGGAAAGAGAAAGCTGCCAGTTGATGCAGAAACTTAACTATAGCAATGAGAACATATCTGTGATTCTTGTAAGGGGAAAGGAAGTTCCTAGATCAATATTAGAGGCTTCAAAGGGCTCTGTTGAAACAGATCGACGTATTTCCAAGCGCTGCCGGAAATCTAAAAATGGTACATTGATAAGTCTTAAAGTTTCTGCTTCAACATCACTGTACCAGCTAAAAATGATGATATGGGAGGCCTTTGGGGTTGTAAAGGAAAACCAGATATTACAGAAAGGTGACAGGACAATTGATAATGAGGATGAATGTGCTACGCTTGCAGATGTAAACATATTTGCTGGAGATCAGATTATAGTGAGAGACTCTGAGATCCATGAAAATAGAGATATTGCCGATGAGATTTGTGATGATAAAATGGAAGTGCAGAGGAGTGAGGGAGGGTTTCATGGAACGCTTCTGACAGCAGACATTTCATCTCAGGTTGTTTGA 3225 0.4124 MSRPTTRSKNKRQRQVDDGASTSEIWRKIHETGVVTDDDTNQLYMIWKPICSSCRVNTKDNPNCFCALVPPPNGNRKSGLWQKISGIIDNLGPDPTKDLRAYANSPAGLTNLGATCYANSILQCLYMNKCFREGIFSVEPDLLQQQPVLNQLVRLFVQLHISKRAFVDSFPFVKTLELDNGVQQDSHEFLTLLLSLLECCLSHSEVPKARTVVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGFKSLDESLNDYLAAEELCGDNQYFCASCKTRVDATRSIKLRTLPGVLNFQLKRCIFLPETTTRKKITSAFSFPAKLDMQPRLSEPSQSELIYDLSAVLIHKGTTVNSGHYVAHIKDENTGQWWEFDDEHVTKLGCHPFGDKSSNSMAKSVRTDPIHSDASEVRIADSNGNGLDASHSQSSLVETFSSSDAYMLMYILKHTKNVVKMGDVLSSGDAVPAQDSFPLLSHLFDEIQNLNASYVDECAQYNQRKELELSRINERRQEVRSVLAEAPVQPLEQPFYWISSEWLRQWADNISPSTLDNTSIQCSHGKVPVSKVTSIKRLSNKAWDTLFTKYGGGPTLSHGDCCWDCLIDGAHSVVSADTYRDRRESMKQLARDILDGNCPDGKYYVSRPWLQQWWKRKVLDAPSEADAGPTATISCPHGQLLPEQAHGAKRVLVPKSLWHFLYEDALSVKPDDALGCPALPSDSMPCSQCSDELSEVACLEDSLRLVKQVQRQNHEKLLLAKSMPLSLHWKYFLVPSSWISKWRSYMSPSVKNSDKPDTLDGIINSLMCVKHSLLVEKPPELVFRRGAIVQQESSAGGLTMISENDWKCFCEEWGGTETKSISATIENTGDSENILTEFSSETQICEDQLNDKVNNDSGTRRLVIKTCPEICESCIGERESCQLMQKLNYSNENISVILVRGKEVPRSILEASKGSVETDRRISKRCRKSKNGTLISLKVSASTSLYQLKMMIWEAFGVVKENQILQKGDRTIDNEDECATLADVNIFAGDQIIVRDSEIHENRDIADEICDDKMEVQRSEGGFHGTLLTADISSQVV 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1515 1074 Gene3D - 739 861 IPR035927 -
Lele27g1515 1074 Gene3D - 498 596 IPR035927 -
Lele27g1515 1074 SUPERFAMILY DUSP-like 635 700 IPR035927 -
Lele27g1515 1074 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Lele27g1515 1074 ProSiteProfiles DUSP domain profile. 507 599 IPR006615 GO:0004843
Lele27g1515 1074 CDD Ubl_USP48 964 1065 IPR044743 GO:0004197|GO:0004843|GO:0016579
Lele27g1515 1074 Gene3D Cysteine proteinases 94 450 - -
Lele27g1515 1074 SUPERFAMILY DUSP-like 509 595 IPR035927 -
Lele27g1515 1074 SUPERFAMILY Cysteine proteinases 104 451 IPR038765 -
Lele27g1515 1074 SUPERFAMILY Ubiquitin-like 966 1032 IPR029071 -
Lele27g1515 1074 MobiDBLite consensus disorder prediction 1 21 - -
Lele27g1515 1074 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 450 IPR028889 -
Lele27g1515 1074 ProSiteProfiles DUSP domain profile. 742 862 IPR006615 GO:0004843
Lele27g1515 1074 CDD Peptidase_C19L 108 447 IPR033841 GO:0004843
Lele27g1515 1074 FunFam ubiquitin carboxyl-terminal hydrolase 48 94 450 - -
Lele27g1515 1074 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Lele27g1515 1074 Pfam Ubiquitin carboxyl-terminal hydrolase 108 447 IPR001394 GO:0004843|GO:0016579
Lele27g1515 1074 ProSiteProfiles DUSP domain profile. 614 721 IPR006615 GO:0004843
Lele27g1515 1074 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 70 450 - -
Lele27g1515 1074 Gene3D - 960 1034 - -
Lele27g1515 1074 SMART dusp 525 596 IPR006615 GO:0004843
Lele27g1515 1074 FunFam Ubiquitin carboxyl-terminal hydrolase 26 498 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1515 Lele-ChrLele27 21103952 21110293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1515 95 382 Miscellaneous Gene Families AT4G31670 29.747 2.20e-26 114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1515 27 21103952 21110293 Lele01g0588 01 3458821 3461920 CCT
Lele27g1515 27 21103952 21110293 Lele02g0580 02 3473484 3476685 CCT
Lele27g1515 27 21103952 21110293 Lele03g0591 03 3485374 3489353 CCT
Lele27g1515 27 21103952 21110293 Lele04g0596 04 3617856 3621033 CCT
Lele25g0562 25 3575230 3581567 Lele27g1515 27 21103952 21110293 hybridization
Lele26g0576 26 3665966 3674442 Lele27g1515 27 21103952 21110293 hybridization