Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1499 ATGCCTGTCAAATCGGCGCAGTCATCGTATCGGGATCGGACGCAGGAATTTCAGAGTATAGCAGAGAGACTAAACAAATCAGTGTCATCCGGATCAGGACCAAACGGGCCAAGCAGTAGTTCAAGATCGGATGAACAGCGATCTGCAATCGCAATTCAGTCAGAATTCAATAGGAGGGCTTCCAAGATTGGTTATGGGATACATCAGACGTCACAGAAACTTGCTAAGCTGGCCAAGCTGGCAAAAAGGACTTCGGTTTTTGATGACCCCACCATGGAAATCCACGAGCTCACAGCTGTTATTAAGCAAGATATCACTGCACTGAACTCTGCCGTTGTGGACCTTCAGCTAATCAGCAACGCTAGAAATGACGGTGGAAATATCTCTAGTGACACAACTAGTCATTCAACCACAGTTGTGGATGACCTTAAAACCCGATTGATGAGCGCCACAAAAGAGTTCAAAGAAGTCCTCACCATGCGAACAGAGAACTTGAAGGTACATGAGAATAGAAGACAGCTGTTTTCTTCCACTGCTTCTAAGGAAGCTGCGAATCCTTTTGTTCGTCAACGTCCCTTGGCTGCAAGGTCAGCTGCCAATGCCCCTGCACCCCCATGGGCTAGTGGATCAACATCTTCATCTCAGTTGCTTCCAAAGAAGCAAGTGGATGGGGAGAGTCAACCATTGCTGCTGCAGCAGCAGCAGCAGCAATTGGTTCCATTGCAGGATTCATATATGCAGAGCAGAGCTGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGTTGAGCAGCATTTTTAATCAATTGGCAACACTGGTTTCCCAACAAGGGGAAATTGCCATCAGGATTGATGAGAACATGGACGATACGTTGGCAAATGTAGAAGGGGCGCAGGGGGCTTTGCTAAAATATCTGAACAGTATATCTTCTAATAGGTGGCTGATGATCAAGATATTCTTTGTATTAATATTTTTTCTCATGGTTTTCCTATTTTTTGTGGCATAA 1008 0.4524 MPVKSAQSSYRDRTQEFQSIAERLNKSVSSGSGPNGPSSSSRSDEQRSAIAIQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIHELTAVIKQDITALNSAVVDLQLISNARNDGGNISSDTTSHSTTVVDDLKTRLMSATKEFKEVLTMRTENLKVHENRRQLFSSTASKEAANPFVRQRPLAARSAANAPAPPWASGSTSSSQLLPKKQVDGESQPLLLQQQQQQLVPLQDSYMQSRAEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1499 335 Pfam SNARE domain 279 331 IPR000727 -
Lele27g1499 335 SMART tSNARE_6 238 305 IPR000727 -
Lele27g1499 335 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Lele27g1499 335 CDD SNARE_syntaxin5 246 324 - -
Lele27g1499 335 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 243 305 IPR000727 -
Lele27g1499 335 ProSitePatterns Syntaxin / epimorphin family signature. 249 288 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lele27g1499 335 MobiDBLite consensus disorder prediction 194 216 - -
Lele27g1499 335 MobiDBLite consensus disorder prediction 21 47 - -
Lele27g1499 335 FunFam Syntaxin-32 like 50 298 - -
Lele27g1499 335 PANTHER SYNTAXIN 50 327 IPR045242 -
Lele27g1499 335 Gene3D - 50 298 - -
Lele27g1499 335 SUPERFAMILY t-snare proteins 54 298 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1499 Lele-ChrLele27 21000041 21003036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1499 1 335 SNARE and Associated Proteins AT3G24350 65.374 3.79e-150 425