Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1492 ATGCTGAGAATGGCGCAGCATAACAAAGGCAATCACAGTCCGAGCCAACAGCATAACAAATGCAATCACAGTCCGAGCCAACAGTTGGTGAAACCAGTCTTTCATGACTTTATGGGCATGAAGCCCACTGATTCGCCCCTCGTTGCGGCCCCTAAAACCGCTGAAGCGAGGCCGTCGGAGGCGTCGCCATCGTCGGCATCGGTCTCTGTTGGCGCCTCTTCCGGTGTTGCTCGTGGCCCCCTCTCAACCACCTCTGATATCGCTTCTGGGTGGGCTCTGCTTGTGATTTCGATAGAAGCTCTGGGACTTGAGATTTAAAGGCAGTTAGGAAATCGCCTCGAGGGAGTCCCATTCTATTGCCCGAGGGGTGATCTTTCTGGCACTGAGATTAGTAACAGAATAGTAGGAAACAAGAGAAGTAATTCTGATTCCAGTTTTATGAGTTCCTCCAGAGATGCCTTCCAAATGTCGAGGAAGCCAACTTCTTCTCACATATATCAGCCTTCCACGGGCGCGAAGACTGATGTCAATAAATGGGAGCGATCTATTCTCATGAATACTGGCTCTTCCATGCAACATCCACCACATGGGGGTCAATTAGCATCTTTTGTGCATCGGATGCCTTCGAACAAGAGCATTGATGCTAATGCTGGTCCTTCATTTATTTCTGAATCCGCTGCTGATGAAGGATCTAGAACAGGAATCAAGGGCCCTGGGATCTCGAGTTCTATGAACCCTACCACTGCTGCTTATGGGAAATCTCTATCTGCACTTAGCGGAAACAGGCCAAAGCCATTGACTGATATAATAGACCCAGAATCTTCCATGCCTCCAAGTCAACAAGGGTTAGCACCTGCCAGCTGCCAGATGACTATTTTTTATAGAGGTCAAGCTCACGTTTTTGATAATGTTCACGCCAATAAGCTAATTTATGTACCATCTGTGAGGAAACATACAATTGGGAACTTCCAAATTCCAAGTACAGTTGAATTGCTTCGCCTTTTGGATTACTGTGGAATGAATGACCATGCTGAAATTATAATGGCTTTAGCTGGGTCAAATGGTGGATGTTGGTCCACAGCATACTCCCCAAAACCTGCTGTGAGGCGCACTAATGACAATAACATGCTGGAAGCATTGCAGCCAATGAAGGTGCCAGGAATTCAATCAAAGCATCGGATCCCAGTCCTGAGGACAAAAGGACGCAATCTCATTGAACCTCTGGCAGTCTATAATCTGAACTGTGGTCGGTTCCCATTGATTATAGAGATTGTTCTTATTCTGAATGTTGTCTGA 1296 0.4676 MLRMAQHNKGNHSPSQQHNKCNHSPSQQLVKPVFHDFMGMKPTDSPLVAAPKTAEARPSEASPSSASVSVGASSGVARGPLSTTSDIASGWALLVISIEALGLEIXRQLGNRLEGVPFYCPRGDLSGTEISNRIVGNKRSNSDSSFMSSSRDAFQMSRKPTSSHIYQPSTGAKTDVNKWERSILMNTGSSMQHPPHGGQLASFVHRMPSNKSIDANAGPSFISESAADEGSRTGIKGPGISSSMNPTTAAYGKSLSALSGNRPKPLTDIIDPESSMPPSQQGLAPASCQMTIFYRGQAHVFDNVHANKLIYVPSVRKHTIGNFQIPSTVELLRLLDYCGMNDHAEIIMALAGSNGGCWSTAYSPKPAVRRTNDNNMLEALQPMKVPGIQSKHRIPVLRTKGRNLIEPLAVYNLNCGRFPLIIEIVLILNVV 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1492 431 MobiDBLite consensus disorder prediction 8 29 - -
Lele27g1492 431 SMART tify_2 283 318 IPR010399 -
Lele27g1492 431 MobiDBLite consensus disorder prediction 1 81 - -
Lele27g1492 431 MobiDBLite consensus disorder prediction 214 246 - -
Lele27g1492 431 MobiDBLite consensus disorder prediction 58 81 - -
Lele27g1492 431 MobiDBLite consensus disorder prediction 262 282 - -
Lele27g1492 431 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 126 375 IPR040390 -
Lele27g1492 431 ProSiteProfiles Tify domain profile. 283 318 IPR010399 -
Lele27g1492 431 Pfam tify domain 285 308 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1492 Lele-ChrLele27 20946788 20950099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1492 4 308 Tify Gene Family AT4G32570 33.648 4.96e-37 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lele27g1492 tify 1.5e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0589 25 3749351 3752820 Lele27g1492 27 20946788 20950099 hybridization
Lele26g0604 26 3850684 3854213 Lele27g1492 27 20946788 20950099 hybridization