Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1488 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGACGTTTACATACATGATTACTTAGTAAAGAGGGACTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCATCCGATCCTGTCGCTATTGATGCTCCAGGAGGTTTTCTCTTCGAGTGGTGGTCTGTTTTTTGGGATATATTTATCGCTCGGACTAATGAGAAACACTCAGAAGTTGCTGCATCTTATATCGAGACACAGTTACTTAAGGGAAGGGAGCAGCCGCAGCCACAACCTCAGCAGCAACAGCAACACATGCAGATCCAACAGCTCCTGATGCAGAGGCATGCACAACAGCAGCAGCAGCAGCAACAGCAACAGCAACAACAGCAGCAACAGCAACAACAGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAGCGGCAACAACAACAACAGCCCCAGCAACAGCAGCCACCGCCGCAACAGCAGAGAAGGGATGGGCCTCATCTCTTAAATGGCAGTACAGATGGGATAGTTGAGAACCCACTAATGCGGCAAAACCCTGGTACTGCGAATGCACTGGCCACAAAGATGTATGAGGAAAGGTTAAAACCGCCTCTTCAGAGGGATTCTTTGGACGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAACTCTTGGACCCAAGTCATGCCTCCATATTGAAGTCAGCTGCAGCTTCTGGCCAACAACCTTCAGGGCAAGTGTTGCACGGTGTTGGTGGTGGGATGTCTCAACAAGTTCAAGCTCGTAGTCCACAATTACCAGGGTCTGCTCCGGATATAAAGAGCGAGATAAATCCTGTTTTAAATCCTAGAGCTGCAGGTCCTGAAGGATCATTGATAGGAATTCCTGGATCAAATCAAGGTAGCAACAATTTGACTCTCAAAGGGTGGCCACTTAAAGGGTTGGATCAACTACGCTCTGGTCTTCTCCAACCACAAAAGGCTTTTATGCAGGGCCCTCAGCCCTTTCATCAAATTCAAATGTTGTCGCCACAACATCTTATGCTTGCTCAACAAAATCTTGCATCACCATCTGCCAGTGATGAAAATAGACGACTTAGAATGCTTTTGAATAATCGGAATATGGGTCTGAGTAAGGATGGTCTTTCAAACCCCATGGGTGATGTGGTATCAAATGTTGGGTCGCCACTTCAAGCTGGCAGCTCTCTTTTGCCTCGTGGAGATACAGATATGCTAATGAAGTTAAAATTGGCTCAGTTACATCAGCAGCATCAACAACAGAATACCAATCCACAGCAGCAGCAGCTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACTTCAAGTTTTAACATGCATCAGCAAGACAAAGTTGGGGGTATTAGTGGTGTCACAGCAGATGGGAGCATGTCAAACTCTTTTAGAGGAAATGATCAGGCTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCCGTATCTTCTTCTGGTCCTGCCAATAGCTCAGGAACAGCAAATACGACTGGCCCATCTCCAAGTTCAGCACCGTCAACCCCTTCAACTCATACTCCTGGAGATGTGATATCGATGCCTGCTGTGCCTCATAATGGTAGTTCTTCAAAGCCTCCTATGATGTTTGGCACTGATGGCACTGGAACTCTTACATCGCCTTCAAATCAGTTGGCTGACATGGATCGATTTGTTGATGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATGTTGTTGGTCGTTGTATGGATATAAGCAAAGGCTTCTCATTTGCTGAAGCCAATTCTGTGCGAGCTAGTTCAAGCAAAGTTGTCTGTTGCCACTTCTCATCTGATGGGAAATTGCTCGCAAGTGGTGGCCATGACAAAAAGGCTGTCTTATGGTTCACAGATTCTCTAAAGCCAAAAGCTACTCTTGAAGAACACTCATCTTTGATAACTGATGTCCGTTTTAGTCCAAGCACGCCCCGTCTTGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGATATACGCTTCGCACCTTCACAGGACATTCTGCATCTGTTATGTCACTAGATTTTCATCCAAATAAAGATGATCTTATCTGCTCTTGTGATGGCGATGGTGAAATACGATATTGGAGCATAAATAATGGCAGCTGTGCTAGAGTCTCTAAGGGTGGCACCGCTCAGATGAGGTTTCAACCTCGCACAGGGAGGTATCTTGCCGCTGCTGCAGATAACGTTGTCTCTATACTTGATGTGGAAACACAAACATGCCAATATTCATTACAGGGTCATACAAAGCCAATTCATTCTGTTTGCTGGGACCCTTCTGGGGAGTTGCTTGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCTGGGTGTGAAGGGGAATGTGTCCATGACCTGAGCTGTAATGGGAATAAATTTCATTCTTGCGTTTTCCATCCAACATATTGTTCGTTGTTGGTCGTCGGTTGTTACCAGTCTTTGGAGCTTTGGAACATGGTGGAGAACAAGACGATGACTCTATCTGCTCACGAAGGACTAATCGCTTCCTTGGCAGTCTCAAATGTAACTGGTTTGGTTGCTTCAGCAAGTCATGACAAGTTTGTAAAGCTTTGGAAGTAA 2691 0.4567 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLLKGREQPQPQPQQQQQHMQIQQLLMQRHAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRQQQQQPQQQQPPPQQQRRDGPHLLNGSTDGIVENPLMRQNPGTANALATKMYEERLKPPLQRDSLDDAAMKQRFGENMGQLLDPSHASILKSAAASGQQPSGQVLHGVGGGMSQQVQARSPQLPGSAPDIKSEINPVLNPRAAGPEGSLIGIPGSNQGSNNLTLKGWPLKGLDQLRSGLLQPQKAFMQGPQPFHQIQMLSPQHLMLAQQNLASPSASDENRRLRMLLNNRNMGLSKDGLSNPMGDVVSNVGSPLQAGSSLLPRGDTDMLMKLKLAQLHQQHQQQNTNPQQQQLQQHALSNQQSQTSSFNMHQQDKVGGISGVTADGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPAVPHNGSSSKPPMMFGTDGTGTLTSPSNQLADMDRFVDDGSLDDNVESFLSHDDTDPRDVVGRCMDISKGFSFAEANSVRASSSKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKPKATLEEHSSLITDVRFSPSTPRLATSSFDKTVRVWDVDNPGYTLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTAQMRFQPRTGRYLAAAADNVVSILDVETQTCQYSLQGHTKPIHSVCWDPSGELLASVSEDSVRVWTLGSGCEGECVHDLSCNGNKFHSCVFHPTYCSLLVVGCYQSLELWNMVENKTMTLSAHEGLIASLAVSNVTGLVASASHDKFVKLWK 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1488 896 Gene3D - 589 745 IPR015943 GO:0005515
Lele27g1488 896 MobiDBLite consensus disorder prediction 86 106 - -
Lele27g1488 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 864 896 - -
Lele27g1488 896 ProSitePatterns Trp-Asp (WD) repeats signature. 673 687 IPR019775 -
Lele27g1488 896 MobiDBLite consensus disorder prediction 144 185 - -
Lele27g1488 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 654 689 IPR001680 GO:0005515
Lele27g1488 896 CDD WD40 612 896 - -
Lele27g1488 896 FunFam Transcriptional corepressor LEUNIG 740 896 - -
Lele27g1488 896 Pfam WD domain, G-beta repeat 693 730 IPR001680 GO:0005515
Lele27g1488 896 Pfam WD domain, G-beta repeat 649 686 IPR001680 GO:0005515
Lele27g1488 896 Pfam WD domain, G-beta repeat 859 896 IPR001680 GO:0005515
Lele27g1488 896 Pfam WD domain, G-beta repeat 774 809 IPR001680 GO:0005515
Lele27g1488 896 Pfam WD domain, G-beta repeat 617 643 IPR001680 GO:0005515
Lele27g1488 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 779 811 IPR001680 GO:0005515
Lele27g1488 896 MobiDBLite consensus disorder prediction 421 546 - -
Lele27g1488 896 SUPERFAMILY WD40 repeat-like 610 896 IPR036322 GO:0005515
Lele27g1488 896 Pfam LisH 10 36 IPR006594 GO:0005515
Lele27g1488 896 Gene3D - 746 896 IPR015943 GO:0005515
Lele27g1488 896 MobiDBLite consensus disorder prediction 467 527 - -
Lele27g1488 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 864 896 IPR001680 GO:0005515
Lele27g1488 896 Coils Coil 103 149 - -
Lele27g1488 896 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 896 - -
Lele27g1488 896 SMART Lish 8 40 IPR006594 GO:0005515
Lele27g1488 896 SMART WD40_4 816 855 IPR001680 GO:0005515
Lele27g1488 896 SMART WD40_4 690 730 IPR001680 GO:0005515
Lele27g1488 896 SMART WD40_4 647 686 IPR001680 GO:0005515
Lele27g1488 896 SMART WD40_4 857 896 IPR001680 GO:0005515
Lele27g1488 896 SMART WD40_4 772 810 IPR001680 GO:0005515
Lele27g1488 896 SMART WD40_4 605 644 IPR001680 GO:0005515
Lele27g1488 896 SMART WD40_4 733 769 IPR001680 GO:0005515
Lele27g1488 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 654 689 - -
Lele27g1488 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 697 735 - -
Lele27g1488 896 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lele27g1488 896 MobiDBLite consensus disorder prediction 144 166 - -
Lele27g1488 896 MobiDBLite consensus disorder prediction 421 460 - -
Lele27g1488 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 612 643 IPR001680 GO:0005515
Lele27g1488 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 697 739 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1488 Lele-ChrLele27 20917870 20925157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1488 691 895 Miscellaneous Gene Families AT5G08390 25.714 8.97e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lele27g1488 WD40 0.069 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0594 25 3774568 3781852 Lele27g1488 27 20917870 20925157 hybridization
Lele26g0608 26 3879238 3889134 Lele27g1488 27 20917870 20925157 hybridization