Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1483 ATGACGGCGGTGCGTCAAAAAATGAAGAATCTGTTTGCCCATTCAATCTGTTGCAGCAGAGGAGACGAGCAAGAGATTGAGCTTGAGCAAATGTCCAGGGACGAGGGCAGCCATTACAGCCTCGTCGGAGCCCCTCTTCCTTCTCTTGGCGCAAGTGCCGCCAGCACCAGTCGCCGGCCCAAGCTCCGATCCTTCATCATCTCTCCGTTCAACCCTCGTTACAGATGCTGGGAAACATTTTTGATCGTTTTAGTTTTCTACACTGCATGGGTTTGCCCCTTTGAGTTTGGATTCCTTAATGAATGTAAGGGTCCTCTTGCCATAACAGATAATGTTGTCAACGGCTTTTTTGCCATAGACATTGTTCTGACCTTCTTTGTTGCCTACCTCGACAAAAGTTCTTATCTGTTCATCGACAACCCGAAACTGATTGCACTGAGATACGCCAAAACCTGGCTGTTCTTTGATGTCATCTCTACCATCCCTTTTGAACTTGCTCGCATAGTATTGCCCACACCTCTTCAGACATATGGGCTCTTTAACATGCTGCGTCTTTGGCGTCTCCGTAGAGTCAGTGCTATGTTTGCAAGGTTAGAAAAGGACAGGAATTTTAACTACATCAGGATCCGCTGTTCAAAGCTGATATGTGTTACAGTGTGTACAGTGCATTTTGCCGCCTGTTTTTTCTATTTTCTTGCTTCAAATCATGACATAAAAACCACATGGTTTAGCCTAGTTGCTAATGGCGACCAGATGCATCTGTGGGGACACTATGTAACATCAGTATACTGGGCCTTAGTTACCATGTCGACCGTAGGTTATGGTGATTTGCATCCTGTAACTACAAAGGAGATGGCGTTTGACATTTTCTATATATTCTACATTCTTGGACTTAACTCATATCTTATAGGAAATATGACCAATATGGTTGTCCAACTCACAAGTCGAACCAGGAAATATAGAGACACTGTTCAAGCTGCCACTGGTTTTGCACAACGGAACCAATTGCCTGTCCGCTTGCAAGAGCAGATGCTTGCTCATTTGTTTATGAGGTATAGAACAGATTTAGAAGGACTGCAGCATCAAGAGGTTATTGATTCTCTTCCAAAGGCGATTCGATCCAGCATATCACACCACCTCTTCTATTCACTTGTTGACAAAGTCTACTTATTTCATGGCGTCTCCAATGACCTACTTTTTCAACTGGTCGCGGAAATGAATGCTGAGTACTTTCCTCCAAAGGAAGATTTGATTTTACAGAATGAAGCACCAACAGACTTTTATATATTGGTTACCGGCGCAGCTGAACTCGTGATCCAAGAGAATGGTATAGAACAGGTTGTTGGTGAGGCAAAGGTAGGAGATGTAGTTGGAGAGATAGGCGTGCTATGCTACAGGCCACAACACTTCACAGTTAGAACCAAACGATTGAGCCAGCTTCTACGTCTAAATCGCACTGCATTTCTAAATCTTGCTCATTCAAATGTTGGAGATGGGACAATAATCATGAGTAATTTTCTTCAGCATTTGAAGGAATCAAGTGATCCAATGATGGGGGGAATTTTGGCAGAAACGGAGGTCATGCTTGCTCGGGGCAGAATGGATTTGCCTATCAGTCCATGCTTTGCTGCAAACAGAGACGATGATCTTTTGTTGCGTCAGTTGCTGAAGAGGGGTTCAGATCCAAATGAAACAGATAAAAATGGAAGGACGTCACTGCATATTGCCGCATCTAGAGGCAACGAACACTGTGTGGTTCTACTTCTTGAATATGGAGCCGATCCTAACAGAAAAGATTTAAATGGAAGTATCCCACTATGGGAAGCAATGTTGGGAGGGCATGAATCGGTGATAAAGCTTCTGATGGACAATGGTGGAGACCTATCCTGTGCGGATGTGGGGCATCTGGCATGCTCTGCAGTGGAGCAAAACAACTTGGAATTGCTCAAAGAAATTGTAAGATATGGTGGTGACGTGACGCAGCCCAGAACCAACGGCACAACAGCACTTCACACGGCAGTATGCGATGGAAACACTGAGATAGTGAAGTTCCTTGTACAGCAAGGAGCAGATATTGATTGGCCAGACGTTCATGGATGGACTCCTCGGACTCTGGCAGATCATCAAGTCCATGAAGATATCATGGAGATGTTCCACAACATCCGAGAGGGCGAAAAAACCCAAGTTATTCCCACGACGATGAATTATTCCAAGTGCCTCAGGAAGTTTCATAGTGAACCAACTGCGCGTGCCCCTCAAGACGTGAATTGGTTGCCGAATCATCCAAGGCGAAGAGCCAACCATTTTCACAATTCTTTCTTTGGGATCATGTCGGCTGCTGCCAACCGTGATCAATCCCATGCATCATCACAAGACAATGATGATGTTGCAGAGAACCTGAATGGATTCGCAGCGAGAATAGTTGTGAGTTGTCCAGAAAAAGGGGAACATGGTGGGAAGCTCGTGTTTCTGCCAAAGTCCCTTGAAGAACTGACAGACATAGGTGTGAAAAAGTTTGACTTTTTGGCCAACAAAATTTTGACCAAAGGAGGAGCTGAGATTGAGGATATAAAGCTTATAAGAGATGGAGATCATCTCATTCTCGCACGTGATAGAGCTCTTGAGCCCGATGAAGAAGGCAGGTAG 2646 0.4478 MTAVRQKMKNLFAHSICCSRGDEQEIELEQMSRDEGSHYSLVGAPLPSLGASAASTSRRPKLRSFIISPFNPRYRCWETFLIVLVFYTAWVCPFEFGFLNECKGPLAITDNVVNGFFAIDIVLTFFVAYLDKSSYLFIDNPKLIALRYAKTWLFFDVISTIPFELARIVLPTPLQTYGLFNMLRLWRLRRVSAMFARLEKDRNFNYIRIRCSKLICVTVCTVHFAACFFYFLASNHDIKTTWFSLVANGDQMHLWGHYVTSVYWALVTMSTVGYGDLHPVTTKEMAFDIFYIFYILGLNSYLIGNMTNMVVQLTSRTRKYRDTVQAATGFAQRNQLPVRLQEQMLAHLFMRYRTDLEGLQHQEVIDSLPKAIRSSISHHLFYSLVDKVYLFHGVSNDLLFQLVAEMNAEYFPPKEDLILQNEAPTDFYILVTGAAELVIQENGIEQVVGEAKVGDVVGEIGVLCYRPQHFTVRTKRLSQLLRLNRTAFLNLAHSNVGDGTIIMSNFLQHLKESSDPMMGGILAETEVMLARGRMDLPISPCFAANRDDDLLLRQLLKRGSDPNETDKNGRTSLHIAASRGNEHCVVLLLEYGADPNRKDLNGSIPLWEAMLGGHESVIKLLMDNGGDLSCADVGHLACSAVEQNNLELLKEIVRYGGDVTQPRTNGTTALHTAVCDGNTEIVKFLVQQGADIDWPDVHGWTPRTLADHQVHEDIMEMFHNIREGEKTQVIPTTMNYSKCLRKFHSEPTARAPQDVNWLPNHPRRRANHFHNSFFGIMSAAANRDQSHASSQDNDDVAENLNGFAARIVVSCPEKGEHGGKLVFLPKSLEELTDIGVKKFDFLANKILTKGGAEIEDIKLIRDGDHLILARDRALEPDEEGR 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1483 881 ProSiteProfiles Ankyrin repeat region circular profile. 568 599 - -
Lele27g1483 881 Gene3D - 76 313 - -
Lele27g1483 881 PRINTS EAG/ELK/ERG potassium channel family signature 258 275 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele27g1483 881 PRINTS EAG/ELK/ERG potassium channel family signature 121 130 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele27g1483 881 PRINTS EAG/ELK/ERG potassium channel family signature 87 94 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele27g1483 881 PRINTS EAG/ELK/ERG potassium channel family signature 110 120 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele27g1483 881 PRINTS EAG/ELK/ERG potassium channel family signature 302 311 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele27g1483 881 ProSiteProfiles Ankyrin repeat profile. 665 697 IPR002110 GO:0005515
Lele27g1483 881 FunFam Potassium channel KAT3 76 312 - -
Lele27g1483 881 PRINTS Ankyrin repeat signature 569 584 IPR002110 GO:0005515
Lele27g1483 881 PRINTS Ankyrin repeat signature 681 695 IPR002110 GO:0005515
Lele27g1483 881 ProSiteProfiles Ankyrin repeat profile. 568 600 IPR002110 GO:0005515
Lele27g1483 881 ProSiteProfiles KHA domain profile. 806 881 IPR021789 -
Lele27g1483 881 SUPERFAMILY cAMP-binding domain-like 315 510 IPR018490 -
Lele27g1483 881 ProSiteProfiles Ankyrin repeat region circular profile. 601 632 - -
Lele27g1483 881 ProSiteProfiles cAMP/cGMP binding motif profile. 390 509 IPR000595 -
Lele27g1483 881 Pfam KHA, dimerisation domain of potassium ion channel 806 868 IPR021789 -
Lele27g1483 881 Pfam Ion transport protein 75 317 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lele27g1483 881 PANTHER POTASSIUM CHANNEL AKT1 36 871 IPR045319 GO:0005249|GO:0006813
Lele27g1483 881 FunFam Potassium channel KAT2 378 514 - -
Lele27g1483 881 Gene3D - 538 720 IPR036770 -
Lele27g1483 881 SMART ANK_2a 665 694 IPR002110 GO:0005515
Lele27g1483 881 SMART ANK_2a 632 661 IPR002110 GO:0005515
Lele27g1483 881 SMART ANK_2a 568 597 IPR002110 GO:0005515
Lele27g1483 881 SMART ANK_2a 601 630 IPR002110 GO:0005515
Lele27g1483 881 ProSiteProfiles Ankyrin repeat region circular profile. 665 693 - -
Lele27g1483 881 Gene3D Jelly Rolls 356 515 IPR014710 -
Lele27g1483 881 SMART cnmp_10 390 507 IPR000595 -
Lele27g1483 881 Pfam Cyclic nucleotide-binding domain 410 494 IPR000595 -
Lele27g1483 881 ProSiteProfiles Ankyrin repeat profile. 601 633 IPR002110 GO:0005515
Lele27g1483 881 SUPERFAMILY Voltage-gated potassium channels 69 311 - -
Lele27g1483 881 Pfam Ankyrin repeats (3 copies) 637 717 IPR002110 GO:0005515
Lele27g1483 881 Pfam Ankyrin repeats (3 copies) 542 629 IPR002110 GO:0005515
Lele27g1483 881 CDD CAP_ED 390 495 IPR000595 -
Lele27g1483 881 SUPERFAMILY Ankyrin repeat 542 720 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1483 Lele-ChrLele27 20863181 20867923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1483 22 870 Ion Channels AT4G32500 59.884 0.0 1043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1483 27 20863181 20867923 Lele02g0608 02 3640864 3646103 CCT
Lele27g1483 27 20863181 20867923 Lele04g0625 04 3781717 3785017 CCT
Lele25g0603 25 3829155 3833693 Lele27g1483 27 20863181 20867923 hybridization
Lele26g0617 26 3934824 3938663 Lele27g1483 27 20863181 20867923 hybridization