Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1476 ATGGATTCTCCTGATGTTACGAAGAAAACCCCCATTTCCATCGCCACTGCCGATGCTGCTTCTTCTTCTGAATCTCCTCCTGTTCAAGAGTCCCCTTTTTTCAGCTTTGTAAACAATTTATCTCCAATAAAGTCTGTCAAGGCTTCTCGTGTGGTTCAAGATTTCCTAGGGCTAAATTCTCCCCCTGTCGTCTTCACGTCACCACGTATTAATCCCCATCTTGGATCCAGGTTCTTGGAGAGGCCTCAATGCTGTCAATCAGCCACTGTGGAAATTTCTCAAAGTGTCAATGGAGGCAAGAGCGTTGCTGATAATCCTGTTGATTCTGACAAATCTACTTTTTTATCGCCGGGATTTATAACTGATAGCAAGAATTGTTCAAGTACTCAGCGCTGCAGCTCTTCACTGTGTGTAGAATCTGTAGATGAATATTTAGCTGATCCTTCAGATATTGATCATACGTCTTCGGGCCATTCAGTCAACCCCGACGTGAAGCAATCCAATGAGAATGTTGGATCATCGCTAAATGACTCAACTCACTCAAAGAGAGCCATATCAAAAGTTGATGACAAAAATGGTCCTGGTGACAATGTGAACGAACCTTTGCTTTTGTTAGAGGAGTCTGAAGGCCGCTATCGAGAAAAGACAAGACTAGTTGATGAAGCGGGGAAAGTAGAAGGGAAGAAAGCTGTTGAATGGCCTTCTCAAGAATGTGCAAAGTTAGAGTCTATTTTGTCTGCTGACCATGTTTTTGAGAAGCGACGTTCTGATGATTCAGTTGTCCAGTGCACAGGAAATGAAATGCAGGATCGTCCTGATTGTACCTCTCAGTCGATGCTTGAGCCTTTGCTGGATGTAAAAGAATGTGAAGATGGTGGCGAGAAGGGGACAACCTCTTATGTAAGTGTACAGAACATGTCACAGGACAGCCCCAAGGCCAGCCAAAAGCACCGAGGCCTGCGTAGACGTTGCCTTCAGTTTGAGGAGGCCGCGTCAAGTGCTTTTAGAAATTTGAAAAGCTCCCTGCTTCAAGCCCATGTTCCCGAAGATTTAATACCATCTGCTAACTCCTCAGATTCAAAAGATTTAGAAGCTTGTCATGTTGCCCTGAATGACACTTCAGCTGAAAAGAGAATGGCCAATCGGTCCAAACCTATCACTACCGCATTTTGTCCACGGTGTAGAAGCTTCCCTGTGAAAGGTTCCAAGCCATCAGGCATTGGGTTGCACTTAAATAGCATTGTAAATGCTATGCCCCATGGCCATGCTGCATTTACAGGTATGAGACTAGCAGAGGGTTGTACAGGTTTACAAGGCGGGAAGTTAGTTAGTTTACTAAGCTGCCGCAATGCTGAGGACCTAAACAGAGGCTTAGTTTCATCAAACATGGACGAGCAACCATCAATTGGCAATAAATGTGAGAGGTACGAAAGGAATGCTTCAATAACTGCGGACTCTCTCCCCTCTGGGTCTCCGAGCTCTATAGAACCTGCAAATTTGTCAATACACGTTGAGAATCCAGCAAGTGATGAAAGAAAATTAAGCTTTGTAGGTGATGGAAAATTTGAGGATTCCAATCGAACAAGCCCCAAAAAGAAAAAGAACAGAACATCGAACCCCATTGATGATGACGGTTGTAAAAGGTGTAACTGTAAGAAGAGTAAATGTTTAAAACTTTACTGTGATTGCTTTGCAGCTGGATTATTTTGTGCTGAGTCTTGTGCTTGCCAAGACTGCTATAATAGACCAGAACGTGGAGATTTGGTTCTCGAGACAAGGCAGCAAATAGAAACCCGTAATCCACTTGCATTTGCACCCAAGATTGTGCAGCATGTTACTGATTTTCCTTCAAATAATATGGACGATACCAATATAACGACACCATCATCGGCAAGACATAAAAGAGGTTGCAACTGCAAAAAGTCAATGTGCCTGAAAAAATATTGTGAATGTTATCAGGCTAACGTCGGATGCTCCAGTGGATGTAGATGCGAGGGATGTAAGAATGTCTATGGCAGGAAAGAAGAATACGTTTCCATTGAACATGCTTTGAGTGAAGGAAGAAGAGACAGAGCAGAAGAAGGATTAAATAGCACTCTTCACAGTCAGCTGGAAACTGAGGCAAAGAAGACGGATTTGTTGCAAGGAGAGTTGTATGATCTGCACTGCCTTTCTCCTCTAACACCGTCTTTGCAATACTCTGACCAAGGAAAGCAAGCTGCAAATTTACGAGCTCCTTCTGGGAAATATCTTCCAGCCACAGAGATGATAAGAAATGTCTCGCATGATTGCCAACAAGATAGCAACAACATGGAAATAATGGATCAATCATCACCAAGATGTAATTCAGTTGCCAAAGTAGGCCAGCTCACTATTTCTAATTCTCAGTCACTCTCTAGTGCTTCATTCTCATCTAAAAAAAGGGACCAGACGCATATGCCACGTGTTCTGTCCGCCGGTTCCCTTCGGTGGCGTAGTTCACCAATCACCCCGATGACGAAATTAGGTGAAACTAAATCTCTACAGTGTCTTGAATCGGATAGCAGACTATATGACATTCTAGAAGATGAAACTCCTGAGATGTTGAAGGAAACTTCTACTCCCATTAAGTCTGTGAAAACAAGTTCCCCTAAGCAGAAGCGAGTTTCTCCTCCTCACGGTCATCTACGTGAACATGGTTCAAGTTCTTCAGGAGGCTTGAGAAGTGGCAGGAAATTTATATTGAAAGCTGTACCTTCTTTCCCACCACTGACCCCATGCATTGTTTCTAAAGCCAGTGATCATGGGAATTCAGAGAATAGCAAGTGA 2808 0.4341 MDSPDVTKKTPISIATADAASSSESPPVQESPFFSFVNNLSPIKSVKASRVVQDFLGLNSPPVVFTSPRINPHLGSRFLERPQCCQSATVEISQSVNGGKSVADNPVDSDKSTFLSPGFITDSKNCSSTQRCSSSLCVESVDEYLADPSDIDHTSSGHSVNPDVKQSNENVGSSLNDSTHSKRAISKVDDKNGPGDNVNEPLLLLEESEGRYREKTRLVDEAGKVEGKKAVEWPSQECAKLESILSADHVFEKRRSDDSVVQCTGNEMQDRPDCTSQSMLEPLLDVKECEDGGEKGTTSYVSVQNMSQDSPKASQKHRGLRRRCLQFEEAASSAFRNLKSSLLQAHVPEDLIPSANSSDSKDLEACHVALNDTSAEKRMANRSKPITTAFCPRCRSFPVKGSKPSGIGLHLNSIVNAMPHGHAAFTGMRLAEGCTGLQGGKLVSLLSCRNAEDLNRGLVSSNMDEQPSIGNKCERYERNASITADSLPSGSPSSIEPANLSIHVENPASDERKLSFVGDGKFEDSNRTSPKKKKNRTSNPIDDDGCKRCNCKKSKCLKLYCDCFAAGLFCAESCACQDCYNRPERGDLVLETRQQIETRNPLAFAPKIVQHVTDFPSNNMDDTNITTPSSARHKRGCNCKKSMCLKKYCECYQANVGCSSGCRCEGCKNVYGRKEEYVSIEHALSEGRRDRAEEGLNSTLHSQLETEAKKTDLLQGELYDLHCLSPLTPSLQYSDQGKQAANLRAPSGKYLPATEMIRNVSHDCQQDSNNMEIMDQSSPRCNSVAKVGQLTISNSQSLSSASFSSKKRDQTHMPRVLSAGSLRWRSSPITPMTKLGETKSLQCLESDSRLYDILEDETPEMLKETSTPIKSVKTSSPKQKRVSPPHGHLREHGSSSSGGLRSGRKFILKAVPSFPPLTPCIVSKASDHGNSENSK 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1476 935 MobiDBLite consensus disorder prediction 297 313 - -
Lele27g1476 935 MobiDBLite consensus disorder prediction 291 318 - -
Lele27g1476 935 MobiDBLite consensus disorder prediction 1 28 - -
Lele27g1476 935 MobiDBLite consensus disorder prediction 796 820 - -
Lele27g1476 935 MobiDBLite consensus disorder prediction 859 902 - -
Lele27g1476 935 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 20 924 IPR044522 GO:0003700
Lele27g1476 935 MobiDBLite consensus disorder prediction 148 199 - -
Lele27g1476 935 MobiDBLite consensus disorder prediction 513 541 - -
Lele27g1476 935 MobiDBLite consensus disorder prediction 864 881 - -
Lele27g1476 935 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 635 669 IPR005172 -
Lele27g1476 935 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 547 582 IPR005172 -
Lele27g1476 935 MobiDBLite consensus disorder prediction 152 181 - -
Lele27g1476 935 MobiDBLite consensus disorder prediction 14 28 - -
Lele27g1476 935 MobiDBLite consensus disorder prediction 914 935 - -
Lele27g1476 935 ProSiteProfiles CRC domain profile. 545 672 IPR005172 -
Lele27g1476 935 SMART CXC_2 544 585 IPR033467 -
Lele27g1476 935 SMART CXC_2 632 673 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1476 Lele-ChrLele27 20817053 20824763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1476 524 675 CPP Transcription Factor Family AT3G22760 60.784 2.10e-57 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lele27g1476 TCR 3.9e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0611 25 3873186 3877965 Lele27g1476 27 20817053 20824763 hybridization
Lele26g0623 26 3981098 3986057 Lele27g1476 27 20817053 20824763 hybridization