Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1467 ATGGGGAAAACTGCTGTCTTTGTGCTTTCAACTTTGCAACAAATTGATCCTGTTGCCGGCCAAGTTTCTGCCCTTGTTTTGTGTCATACAAGGGAATTGGCTTACCAGATATGTCATGAGTTTGAGAGGTTCAGCACCTACCTGCCTGATCTCAAGGTTGCGGTTTTCTATGGTGGTGTCAACATTAAAGTTCACAAGGATCTGTTAAAAAATGAATGCCCTCATATTGTTGTTGGAACTCCTGGAAGAATACTAGCATTGACCAGGGATAAGGACCTTTCTTTAAAGAATGTTAGGCATTTCATTTTGGATGAATGTGATAAGATGCTGGAATCTCTGGCAACAGATCTGGTTGGAAGGGGCATTGACATTGAACGTGTCAACATAGTCATAAACTATGACATGCCTGATTCTGCGGACACATACTTGCATAGGGTTGGCAGAGCAGGAAGGTTTGGCACCAAGGGCCTCGCAATTACATTTGTTTCATGTGCTGCGGATGTTGATGTTCTCAACAATGTTCAATCAAGGTTTGAGGTGGACATAAAACAGCTTCCTGAGCAGATTGATACATCTACATATATGCCATCATAG 594 0.4226 MGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCAADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1467 197 Gene3D - 1 138 IPR027417 -
Lele27g1467 197 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 14 193 IPR001650 -
Lele27g1467 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 163 IPR027417 -
Lele27g1467 197 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 112 IPR014001 -
Lele27g1467 197 SMART ultradead3 1 162 IPR014001 -
Lele27g1467 197 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 114 172 - -
Lele27g1467 197 CDD SF2_C_DEAD 113 162 - -
Lele27g1467 197 SMART helicmild6 39 153 IPR001650 -
Lele27g1467 197 Pfam DEAD/DEAH box helicase 1 115 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1467 Lele-ChrLele27 20762880 20766325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1467 113 197 Eukaryotic Initiation Factors Gene Family AT5G11170 89.412 2.00e-49 162