Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1437 ATGGCTATCAACGGGGAGGTTCATCCTCGTCTTTGTGCTGAGACATTTGATGGAACCCAACTTCAATTCACTGAGACAGCTCATTGCCTGGAGCGTGAAAGTGGCTTTTATTTCCACATTGGTGGAGAAAGACCCTATGCTAGAGACATTGTGAACCACGAGTTCCCTCAGTTCACACCATACAACAACAGAATATCTGATCAAACAATGGAGCTGGTTTGCATGGAGAATTACAGAATTGGAAATGAAGTAGCTAGTTTAATCATATATATACCAATATTCTTAACTGGTAATCTGCAAGACAAGCAGGGATTGTGGCTCGAGCGTGAAAGTGGTTGCTACTTTGACAAGAAACATTTTGAGGACATGGTGCTTGATGGGAAATTTGAGGACGCCGAGACCTATCTATCTTGTTTCACAAATGTTGATGACAATAGGTTCTCCACCAAAATGTTCTTTGAATTGAGGAAACAGAAATTCCTTGAGGCATTGGACAGAAATGATCGTTCCAAGGCTCTAGATATCCTGATAAAGGATCTCAAAGGTTTTTCCCCAGGACGCGAAGAGCTTCTCAAAGAAATGACTCAGCTGTTGACAATTAATAATATAAGGGAACATGAATCTCTTTCAAACTACCCAGACACAGATTCTGTGAGGAAGATTATCGTAGAGGATCTTAAAACAATGATTGAAGAAAATCCACTGCTTAATGGAAAGCTCGACTTAAATGGGCAGCATCTGCCTTGCAAACATCCTATTCCTGATCCTGGTATACAAACCCTCTTCGTGGACCATGTTTGTAAGCTGTGCTCAAATCCCTCAAATCCTGTAAACAGTGATGACTGTGGCCCATCTACTGTAACAGATTCCTTACTCTTCCCTACTGCTGATGAAAGTTCAGAAACGCTTGTGAAGATTCTTGAGGATCCTAATCAAATATCCAAGGGAAAATCCTGCCAAGCTTTAAATGAGGTAACATCATCTGCTGTAGAAAGTTACCTGCCCCAGAAAGTTGTTATGACACTGAATGATGATTCGCCTCCTACTAGCATGGATTTTCACCCTAATTTGCAAACTATTCTTCTAGTTGGAACCGAAATTGGCAATTTAGGAATTTGGGATGCTACCTCTGGTAAGAGGTTGTTCATTGTAAATTTTGAGGTTTGGGACGTTGGAGCATGTTCAACCAATTTCAAGGCAGCCATAGAAAAAGATTTGTGGATCTCTGTTAACAAAGTCATTTGGAGCTTTGATGGTAAAATGTTAGGGGTTGCATTTTCGAAACATCTTGTTCAGTTATATTCCTATATTGATGAGGAAATTGGCCAGCATTTGGAAATTGAAGCTCATGATGGAAGTGTCAATGATATAGCGTTTTCTCTTGTTCGTGGGCCACTATTAGTCATAACATGTGGTGACGACAAGACAGTAAAGATTAAGGCATGGTTATATGATCGTATGGGCCCCCGAGTTGATTATGACGCCCCTGTTCGAGGATACACAACATTGGCTTACAGTACTAATGATGAAAGGCTTTTTTCTTGTGGTGTTGGCAATGATGGAGAGCCATTTCTTTTGGAATGGGATGACAGTGAAGGGAACATAAAAAGAGTCTACAAGGGACTTACGGCTCGATGCTCTTCTAAAATCCACTTTGATACGACGAGGAACCGATATTTGGTTGCTGGTGATGATCATATGGTTAAATATTGGGATATGGACAATGTGCAGCTATTGTCAAGCAACAATGCCGATGGGAGCTTGCTGGCATATCCTTGCATCCGCTTCAACAGAGAGGGGAGATTGCTGGCTGTTGCTGCAAGAGAAAATAAAATCAAAATCTTAGCACCTGATTATGATGTTCTACAGATTCAAAGTGAAGCTCGTTCTATTCATTCCCCTGCTGTGCTCTCTGAAACCTCAGCAGTGAATGAGAACAAAGAAGTCTTGGAAGGCATGATGAACACTAATTTAACCGAAGAAGATGATAACTCATCAAAGTTTTGGAGTACCTTCAAAATTTCTGAACCATCTCAGTGCCAGTTCTTGCAGCTCCCTGTTCATCCAAAAGTCAATAAGATTGTGAGACTGATTTACACCAACGCGGGAAAGGCCATCTTGGCATTGGCATCAGATGGTATAAATGTACTTTGGAAATGGCCAGTGAATGAGCAAGCAACCTCCCAAGTTTCCGCTCGCTTATGGCAACCGAGGAATGGCCCGCAGTTTATGAGCAATGACCTTACTATGATAACTTTCATGTCTCCACCACCTAAGGCAACATCTATTTCCTTCTACCCTCGAGATAATAATGTAATTGCTGTAGGCTTTGATGATGCTAGCATCTTTATTTATAACGTCCGTGTAAACCAGGTTATGAGAAAATTCAAGGGTCACTCAACAAGAATTACGTCCCTTGCCTTCTCAGACAAATTACATGTTCTTGTTTCTGCTGAGGTTAATAATCAGATTATCTTATGGGATGTTGAAGGGTGGAGAAAATTGAAAGGAAGGCACTTGCAGATACCTGCTCAGAGGAAGCCAGAAGTGCCATCCGATACTCACATTCAGTTTCACCCAGAACAGATAAACTTCCTTGCCGTACAAGATAGTCAGCTCGCAATTTATGAAGCCCGGGAATTAAATCTTGTCAAACAGCAGTGGGTTCCAGTACTTCCTTTGGTTATCTCCCATGCAGTTTTCTCATCTGATGGAATGGAAATATATGCCGGTTTTGTGGATGGGACTGTCACAATATTAGACGCTTCAAATCTTGAACCTCTTTGCAGGATAGAGCCCACTGCTTACCTTCCCCCAACTTCAAGTGAGAGCATAAACCTAGTTGCTATGGCTGCAAATCCGGTGAAGGCAGGTCAGTTTGCTGTGGGGCTTTCAGATGGTAATGTGTATGTGATGGAGCCTCCTGAGCCACAACTTAATTGGTCCACACTTTCAAGTGATGACAAGGATTCAGCAGAAGCAGAAGCCAGTGGTGTGGGAGTTGCTGAGTCTGATGAGAATTGA 3024 0.4193 MAINGEVHPRLCAETFDGTQLQFTETAHCLERESGFYFHIGGERPYARDIVNHEFPQFTPYNNRISDQTMELVCMENYRIGNEVASLIIYIPIFLTGNLQDKQGLWLERESGCYFDKKHFEDMVLDGKFEDAETYLSCFTNVDDNRFSTKMFFELRKQKFLEALDRNDRSKALDILIKDLKGFSPGREELLKEMTQLLTINNIREHESLSNYPDTDSVRKIIVEDLKTMIEENPLLNGKLDLNGQHLPCKHPIPDPGIQTLFVDHVCKLCSNPSNPVNSDDCGPSTVTDSLLFPTADESSETLVKILEDPNQISKGKSCQALNEVTSSAVESYLPQKVVMTLNDDSPPTSMDFHPNLQTILLVGTEIGNLGIWDATSGKRLFIVNFEVWDVGACSTNFKAAIEKDLWISVNKVIWSFDGKMLGVAFSKHLVQLYSYIDEEIGQHLEIEAHDGSVNDIAFSLVRGPLLVITCGDDKTVKIKAWLYDRMGPRVDYDAPVRGYTTLAYSTNDERLFSCGVGNDGEPFLLEWDDSEGNIKRVYKGLTARCSSKIHFDTTRNRYLVAGDDHMVKYWDMDNVQLLSSNNADGSLLAYPCIRFNREGRLLAVAARENKIKILAPDYDVLQIQSEARSIHSPAVLSETSAVNENKEVLEGMMNTNLTEEDDNSSKFWSTFKISEPSQCQFLQLPVHPKVNKIVRLIYTNAGKAILALASDGINVLWKWPVNEQATSQVSARLWQPRNGPQFMSNDLTMITFMSPPPKATSISFYPRDNNVIAVGFDDASIFIYNVRVNQVMRKFKGHSTRITSLAFSDKLHVLVSAEVNNQIILWDVEGWRKLKGRHLQIPAQRKPEVPSDTHIQFHPEQINFLAVQDSQLAIYEARELNLVKQQWVPVLPLVISHAVFSSDGMEIYAGFVDGTVTILDASNLEPLCRIEPTAYLPPTSSESINLVAMAANPVKAGQFAVGLSDGNVYVMEPPEPQLNWSTLSSDDKDSAEAEASGVGVAESDEN 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1437 1007 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 107 479 IPR027728 GO:0006355
Lele27g1437 1007 ProSiteProfiles Trp-Asp (WD) repeats profile. 796 830 IPR001680 GO:0005515
Lele27g1437 1007 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 118 171 IPR006595 -
Lele27g1437 1007 MobiDBLite consensus disorder prediction 979 1007 - -
Lele27g1437 1007 SMART WD40_4 391 435 IPR001680 GO:0005515
Lele27g1437 1007 SMART WD40_4 532 572 IPR001680 GO:0005515
Lele27g1437 1007 SMART WD40_4 887 921 IPR001680 GO:0005515
Lele27g1437 1007 SMART WD40_4 335 374 IPR001680 GO:0005515
Lele27g1437 1007 SMART WD40_4 746 786 IPR001680 GO:0005515
Lele27g1437 1007 SMART WD40_4 789 828 IPR001680 GO:0005515
Lele27g1437 1007 SMART WD40_4 440 483 IPR001680 GO:0005515
Lele27g1437 1007 Pfam WD domain, G-beta repeat 791 828 IPR001680 GO:0005515
Lele27g1437 1007 SUPERFAMILY WD40 repeat-like 336 478 IPR036322 GO:0005515
Lele27g1437 1007 SUPERFAMILY WD40 repeat-like 443 921 IPR036322 GO:0005515
Lele27g1437 1007 ProSitePatterns Trp-Asp (WD) repeats signature. 815 829 IPR019775 -
Lele27g1437 1007 SMART ctlh 113 171 IPR006595 -
Lele27g1437 1007 Gene3D - 243 485 IPR015943 GO:0005515
Lele27g1437 1007 Gene3D - 491 638 IPR015943 GO:0005515
Lele27g1437 1007 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 796 830 - -
Lele27g1437 1007 Gene3D - 691 992 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1437 Lele-ChrLele27 20590004 20598257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1437 761 894 U-box Gene Family AT1G04510 26.866 1.09e-06 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0648 25 4087893 4096055 Lele27g1437 27 20590004 20598257 hybridization
Lele26g0660 26 4188328 4197768 Lele27g1437 27 20590004 20598257 hybridization