Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1435 ATGGGGAAGCCCACCGGTAAGAAGAAGGATCCTGTAACACAGAAGGCTGCGAATGCAAGCGGCAAGCCGAGCAAGCCCTCTGAGAGGACTTCCAAAGCTTTTGACGAAGACACAGCAATCTTCATCAACATGTCACAGGATCTCAAGGAAGAAGGCAATAGACTCTTTCAGAAAAGGGACCATGAAGGGGCTATGTTGAAGTTTGAAAAGGCCCTCAAGCTCCTTCCCGGAAACCACATAGATGTGGCACACTTGCGTACCAATATGGCTGCGTGTTATATGCAACTCGGTCTTGGAGAGTACCCTCGAGCAATTAATGAATGTAATTTAGCTCTCGAAGTATCACCCAGATATAGCAAGGCTCTATTGAGAAGAGCAAAGTGCTATGAAGCATTGAATCGATTCGATTATGCACTCAGAGATGTTAATTTTGTTTTGAGCGTGGAGCCTAATAATCTTAATGCATTGGAGGTTCTCGGGAGTTTGAAGAAGACCATGGAAGAAAAAGGCATCACTATTGATGAGGAAGATTTGGCAAGTTTAGAGCAACCTACCACTGCCCCTATGCGTAAAGTGGTCAGAGAAAAACTAAAGAAAAAGAAAAGCAAAAAAAGTGAGAGCAAGGCAAAGGATAAGGCGATTCTTGAGGATACTGCGAATGCTGTTAAAGATAAAGAAATGGTGACAAAAACAATTGCGAAAAAGGAAGTGGTTCTGGAGCCTGTTAAAGAAGACAAAGTAGTCACAAGGACCGTGAAGCTGGTATTTGGAGAGGATATAAGGTCGGCCCAGTTGCCATTCAATTGTAGCATGAGGTTGGTGAGAGACATAATTAAGGATCGATTTCCCGGATTGAAGGGGGTTCTTGTTAAATATAGGGATCAAGAAGGTGATTTGGTTACTATTGCTACTACTGATGAATTACAATTAGCTGAATCTTCAGGTAAAGCCTTGAGTTCTCTTCGACTTTACATTACGGAAATCAATCCAGAGGAGGAACCAACTTATGATGGAATAACCAATGAGGATGAGATGCAAGGTGATGGTATTGAGCATGGGCCAACGGAAGCAGGCAAGGATTTAGCAAGCAAGCTGACTAATGTGGAGGATTGGATAATCCAATTTGCTAGGATGTTCAAGAACCATGTTGGGTTTGATTCTGATGCATATTTGGATATGCACGAGGAGGGAATGAAGCTATATTCAGAAGCCTTGGAGGATGTGGTAACAAGTGACGATGCTCAAGAGCTTTTTGAAATCGCTGCAGATAAATTTCAAGAGATGGCAGCTTTGGCATTATTCAACTGGGGGAATGTTCACATGTCCAGGGCAAGGAGGCGTGCTTCCATTTCAGAGGACGGGTCAAAGGAATCTACTCTTGAGCGAATTAAAGCTGCATATGAGTGGGCAAGAAAGGAGTACAAGAAAGCAGAGATGAGATATGAAGAAGCCTTGAAAGTCAAACCAGACTTCTATGAGGGATTTCTGGCACTTGGCCATGAGCAGTTCGTGCAAGCAAAGCTCTGCTGGTATTATGCAATGGCATGCCAAATGAATTTAGAGGATGGCCCTTCCAGTGAGGTTTTACAACTATATAACAAGGCAGAGGACAGCATGGATAGAGGCATGTTGATGTGGGAGGAGATTGAGGAGCGGCGTTTAAATGGACTATCCAAATTGGATAAATATAGAGCGCACTTGGAAAAAATGGGCTTAGATGGTTTTCTCAAGGATATTTCTTCTGATGATGTTGCAGAACAGGCTGCAAATGCGAGGTCACAAATATATATTTTATGGGGCACCATATTGTATGAGCGTTCTGTTGTGGAATATAAGATAGGCTTACCTTCATGGGAGGAATGTTTGGAGGTTGCAGTCGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACAGATATAGGGGTCATGATAAAGAATCATTGTTCCAATCAAACAGCACTAGAAGGTTTGGGGTTCAAAATCGACGAGATAGTGCAGGCATGGAATGACATGTATGATGCCCAGAGGTGGCAGTTTGGTGTACCATCATTTCGTCTTGAACCATTGTTCCGGCGACGTGTTCCGAGACTTCATCACATCTTAGAGCATTTTTGA 2112 0.4318 MGKPTGKKKDPVTQKAANASGKPSKPSERTSKAFDEDTAIFINMSQDLKEEGNRLFQKRDHEGAMLKFEKALKLLPGNHIDVAHLRTNMAACYMQLGLGEYPRAINECNLALEVSPRYSKALLRRAKCYEALNRFDYALRDVNFVLSVEPNNLNALEVLGSLKKTMEEKGITIDEEDLASLEQPTTAPMRKVVREKLKKKKSKKSESKAKDKAILEDTANAVKDKEMVTKTIAKKEVVLEPVKEDKVVTRTVKLVFGEDIRSAQLPFNCSMRLVRDIIKDRFPGLKGVLVKYRDQEGDLVTIATTDELQLAESSGKALSSLRLYITEINPEEEPTYDGITNEDEMQGDGIEHGPTEAGKDLASKLTNVEDWIIQFARMFKNHVGFDSDAYLDMHEEGMKLYSEALEDVVTSDDAQELFEIAADKFQEMAALALFNWGNVHMSRARRRASISEDGSKESTLERIKAAYEWARKEYKKAEMRYEEALKVKPDFYEGFLALGHEQFVQAKLCWYYAMACQMNLEDGPSSEVLQLYNKAEDSMDRGMLMWEEIEERRLNGLSKLDKYRAHLEKMGLDGFLKDISSDDVAEQAANARSQIYILWGTILYERSVVEYKIGLPSWEECLEVAVEKFELAGASPTDIGVMIKNHCSNQTALEGLGFKIDEIVQAWNDMYDAQRWQFGVPSFRLEPLFRRRVPRLHHILEHF 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1435 703 MobiDBLite consensus disorder prediction 1 33 - -
Lele27g1435 703 ProSiteProfiles TPR repeat profile. 119 152 IPR019734 GO:0005515
Lele27g1435 703 SMART tpr_5 83 118 IPR019734 GO:0005515
Lele27g1435 703 SMART tpr_5 119 152 IPR019734 GO:0005515
Lele27g1435 703 SMART tpr_5 45 78 IPR019734 GO:0005515
Lele27g1435 703 SMART tpr_5 458 491 IPR019734 GO:0005515
Lele27g1435 703 Gene3D - 241 328 - -
Lele27g1435 703 CDD PB1 251 326 - -
Lele27g1435 703 Gene3D Tetratricopeptide repeat domain 43 174 IPR011990 GO:0005515
Lele27g1435 703 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Lele27g1435 703 PANTHER PROTEIN CLMP1 1 702 IPR044517 -
Lele27g1435 703 SMART PB1_new 249 328 IPR000270 GO:0005515
Lele27g1435 703 Coils Coil 460 487 - -
Lele27g1435 703 SUPERFAMILY TPR-like 34 167 IPR011990 GO:0005515
Lele27g1435 703 SUPERFAMILY CAD & PB1 domains 247 337 - -
Lele27g1435 703 Pfam PB1 domain 249 325 IPR000270 GO:0005515
Lele27g1435 703 ProSiteProfiles PB1 domain profile. 249 328 IPR000270 GO:0005515
Lele27g1435 703 SUPERFAMILY TPR-like 388 540 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1435 Lele-ChrLele27 20584382 20586579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1435 28 152 Calmodulin-binding Proteins AT3G25230 31.387 1.00e-07 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1435 27 20584382 20586579 Lele01g0657 01 3840760 3847299 CCT
Lele27g1435 27 20584382 20586579 Lele03g0657 03 3848887 3851103 CCT
Lele25g0649 25 4098684 4100881 Lele27g1435 27 20584382 20586579 hybridization
Lele26g0661 26 4200229 4202426 Lele27g1435 27 20584382 20586579 hybridization