Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1429 ATGGCGTACCACAACCATCATCTCTCTCAAGACCTACCGCTCCACCACTTCACAGAGCAATCTCATCATCAGCAGCATCAGAACCAGGTGCTGACTGATAATTCCTTGCGAACGATATTGCAGGACCCGACCAGTAAGGCCGGCTCCGATCCCAACCAACACCACCACCCGCTTCAAACCGCTCCCAATTGGCTCAACAACGCTCTCCTCCGAACTCACTACGCCGACAACAGTAACGGCAACAACAGTAACACCACTGCTCCGAACAATACCAACGCCACCAATTTCCTCAACCTCCACACCGCCGCCTCCGACTCCACCGGAGCTGCTTCCCAATCCTCCAGCCAATGGCTGGCACGCCCGATCCTCAACCGGAATCATAGTGACGTCATTGACGACGTTACTGCCGGGGACTCTATCATCGCCGGTGCGGCTTTGTCCCATGAGTCCGCGGATTTAAAGGCGACCGGCGACAACCTTAATAGCAAGGGCGAGGCGGTGGTGGTGGACAGCGCCGGCGCCACCGGGGACGGTTTGATGAACTGGCAGAATGCTAGGTCCAGGGCCGAGATTCTTGCCCACCCGCTGTACGAACAGCTGCTATCGGCACACGTGGCTTGCCTGCGGATCGCGACGCCGGTTGACCAGCTGCCGAGGATCGATGCTCAGCTGGCTCAGTCGCAGAATGTGGTTGCCAAGTACTCGGCGTTGGGGCCCGGGAGCCAGAGCATGGTTGGGGACCATAAGGAACTCGATCAGTTCATGTCACACTATGTCTTGTTGCTTTGTTCATTTAAAGAACAACTTCAACAACATGTCAGAGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGAGTTTCACCAGGAGAAGGAACAGGGGCAACAATGTCAGATGATGAAGACGACCAGGTGGACAGTGATGCCAACCTGTTTGATGGTAGTTTGGATGGTTCCGACATGGGATTTGGTCTTCCAACGGAGAATGAGAGGTCCCTCATGGAGCGTGTAAGGCATGAATTGAAGCACGAACTCAAACAGGGTTACAAGGAGAAAATTGTGGACATAAGAGAGGAGATTTTGCGCAAGAGACGAGCAGGGAAACTTCCTGGTGACACAACTTCTGTTCTTAAAGCTTGGTGGCAGTCACATTCCAAGTGGCCTTACCCTACTGAGGAAGACAAGGCAAGGTTGGTTCATGAAACTGGTTTGCAATTGAAGCAGATTAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAATCCTTCCACCTCAACGGTTTTGAAGAGCAAGCGCAAAAGGTGA 1344 0.5253 MAYHNHHLSQDLPLHHFTEQSHHQQHQNQVLTDNSLRTILQDPTSKAGSDPNQHHHPLQTAPNWLNNALLRTHYADNSNGNNSNTTAPNNTNATNFLNLHTAASDSTGAASQSSSQWLARPILNRNHSDVIDDVTAGDSIIAGAALSHESADLKATGDNLNSKGEAVVVDSAGATGDGLMNWQNARSRAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGPGSQSMVGDHKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLDGSDMGFGLPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVHETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1429 447 Pfam Homeobox KN domain 390 429 IPR008422 GO:0003677|GO:0006355
Lele27g1429 447 CDD homeodomain 373 434 IPR001356 GO:0003677
Lele27g1429 447 SMART KNOX1_2 185 229 IPR005540 GO:0003677|GO:0005634
Lele27g1429 447 SMART KNOX2_2 240 296 IPR005541 GO:0003677|GO:0005634
Lele27g1429 447 ProSiteProfiles ELK domain profile. 350 370 IPR005539 GO:0003677
Lele27g1429 447 SMART ELK_2 350 371 IPR005539 GO:0003677
Lele27g1429 447 MobiDBLite consensus disorder prediction 295 314 - -
Lele27g1429 447 MobiDBLite consensus disorder prediction 41 60 - -
Lele27g1429 447 Gene3D - 369 441 - -
Lele27g1429 447 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 36 432 - -
Lele27g1429 447 MobiDBLite consensus disorder prediction 74 93 - -
Lele27g1429 447 ProSiteProfiles 'Homeobox' domain profile. 370 433 IPR001356 GO:0003677
Lele27g1429 447 FunFam homeobox protein knotted-1-like 3 isoform X1 371 432 - -
Lele27g1429 447 Pfam ELK domain 350 371 IPR005539 GO:0003677
Lele27g1429 447 Pfam KNOX1 domain 188 228 IPR005540 GO:0003677|GO:0005634
Lele27g1429 447 SUPERFAMILY Homeodomain-like 372 435 IPR009057 -
Lele27g1429 447 Pfam KNOX2 domain 245 295 IPR005541 GO:0003677|GO:0005634
Lele27g1429 447 SMART HOX_1 372 437 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1429 Lele-ChrLele27 20545501 20548261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1429 1 447 Homeobox Transcription Factor Family AT5G25220 64.468 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele27g1429 KNOX2 1.4e-20 No_clan