Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1426 ATGAAGTCCAAGCTTCTTCCTTTTCTGCTTCTCCTTCTCCTTCTTCTTCACGAACCCATTTCTGTTTATGCTGCAGCAGACCCTCCTGCTCCTCCAAGTCCTCTCCAGACTAATTCTTCAATTCCTGCTTCAATGGCTGCTTCCTCCCCAGGTATTCAGGTGGAGAACAAAGAACACCAAATGGATTTACACAAGAAGATGGTTATAGCTCTCGTCGTTGTTAGTACAGCACTCGTTGTAGTCATTTTGTGCTTCTTATGCTTCTGGATTTATAGTGGGAAGCATCTATCCAAATCCAACAGGAAAAGCGTTCCCAACTCAGATGCCGAGAAAGGGGTGGTGGCGCTTGCTCCATTTTTAAGTAAATTCGGTTCAGTAAAAATGGTTGGGAAAAAAGGGTCTCTTCCAATCATTGATTATACGCAAATAGGAAAAGCGACCAACAATTTCCAGGAAAGTAACATCCTGGGGCAGGGTGGATTTGGATGTGTTTACCGGGCTCGGTTGGACGATAATCTGGATGTTGCCGTCAAGAGACTACACTGTGAAACTCAAAGTGCTGAGAGAGAATTCGAGAACGAGGTGAATTTGTTAAGTGAAATTCGGCATCCAAATATAATTTCTATACTCGGTTGCAGCGAAAATGATGACAAGAGGTTCATTGTCTATGAATTGATGCAAAACGGATCCCTGGAAGCTCAATTACACGGACCCTCTCATGGTGCTTCATTGACCTGGCATATGAGAATGAAAATTGCTCTTGATACAGCAAGAGGATTAGAATATCTCCATGAGCACCGTAAACCTGCAGTGATCCATAGAGATCTGAAATCATCTAATATTCTTTTAGATGCGAACTTCAATGCTAAGCTGTCTGATTTTGGTTTGGCCATAATGGATGGGACCCAAAGCAAGAGTAACATAAAGCTGTCAGGCACATTGGGGTACGTTGCCCCTGAGTATCTCCTAGATGGAAAATTGACCGATAAAAGTGATGTGTATGCATTTGGAGTTGTGCTTCTGGAGCTTCTGCTGGGAAGGAAGCCAGTAGAAAAACTGTCACCATCTCATTGCCAATCGCTTGTGACATGGGCGATGCCACAGCTCACGGACAGAGCAAAGCTTCGAAGCATAGTAGATCCAGTAATCAAGGACGCCATGGACACCAAGCATTTATACCAGGTTGCAGCAGTGGCGGTGCTGTGCGTGCAAGCAGAACCGAGTTATAGACCGTTGATCACGGACGTGCTGCACTCGCTGGTGCCTCTGGTTCCGGTGGAGCTGGGAGGAACACTCGGAGTCTCACATGTGCCCCACTCTGTTATGGCGTGA 1332 0.4565 MKSKLLPFLLLLLLLLHEPISVYAAADPPAPPSPLQTNSSIPASMAASSPGIQVENKEHQMDLHKKMVIALVVVSTALVVVILCFLCFWIYSGKHLSKSNRKSVPNSDAEKGVVALAPFLSKFGSVKMVGKKGSLPIIDYTQIGKATNNFQESNILGQGGFGCVYRARLDDNLDVAVKRLHCETQSAEREFENEVNLLSEIRHPNIISILGCSENDDKRFIVYELMQNGSLEAQLHGPSHGASLTWHMRMKIALDTARGLEYLHEHRKPAVIHRDLKSSNILLDANFNAKLSDFGLAIMDGTQSKSNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLSPSHCQSLVTWAMPQLTDRAKLRSIVDPVIKDAMDTKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLVPLVPVELGGTLGVSHVPHSVMA 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1426 443 ProSiteProfiles Protein kinase domain profile. 150 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g1426 443 FunFam probable receptor-like protein kinase At1g80640 226 425 - -
Lele27g1426 443 PANTHER OS01G0750732 PROTEIN 24 422 - -
Lele27g1426 443 SUPERFAMILY Protein kinase-like (PK-like) 131 420 IPR011009 -
Lele27g1426 443 Pfam Protein kinase domain 150 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g1426 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
Lele27g1426 443 CDD STKc_IRAK 156 423 - -
Lele27g1426 443 ProSitePatterns Protein kinases ATP-binding region signature. 156 178 IPR017441 GO:0005524
Lele27g1426 443 Gene3D Phosphorylase Kinase; domain 1 120 225 - -
Lele27g1426 443 Gene3D Transferase(Phosphotransferase) domain 1 226 425 - -
Lele27g1426 443 SMART serkin_6 150 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g1426 443 FunFam Protein kinase superfamily protein 117 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1426 Lele-ChrLele27 20514280 20517132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1426 54 424 Receptor kinase-like Gene Family AT3G58690 44.709 7.57e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Lele27g1426 Pkinase 6.7e-49 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1426 27 20514280 20517132 Lele02g0652 02 3890440 3894033 CCT
Lele27g1426 27 20514280 20517132 Lele04g0670 04 4041032 4044615 CCT
Lele25g0661 25 4159275 4161725 Lele27g1426 27 20514280 20517132 hybridization
Lele26g0670 26 4258306 4261157 Lele27g1426 27 20514280 20517132 hybridization