Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1424 ATGGGCAGGCCACAACAGAGATACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTGTCTGAAATTCGCCACCCTCTATTAAAGACAAGGATCTGGCTTGGTACTTTCGAAACCGCAGAAGATGCAGCCAGAGCCTACGATGAAGCAGCGAGGCTAATGTGTGGGCCCAGAGCAAGAACTAACTTCCCTTATAACCCCAATGCGTCTCAGTCATCTTCCAAGCTTCTCTCTGCCACTTTGACTGCGAAACTCCATAGATGCTATGTGGCTTCACTGCAGATGATCAGACCCTCATTACCTGAGCCTCAGAGAGTGATGCCTTCTTCGCCACATACTGAAGTTTCCACGAGCAATTCCACTGATACAGTGTTGCCGCACAAGAGAGCCCAAGAAGAGCAAGAATCAGAGGCCAATTGGGTGATGAAGAAGGTGAAGGTGGAAACTAGTCAGCAATTCAAACCTCTTGAAGAGGATCACATTGAGCAGATGATAGAGGAGTTGCTTTATTACGGTTCTATTGAACTCTGCTCTTAA 537 0.4842 MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNASQSSSKLLSATLTAKLHRCYVASLQMIRPSLPEPQRVMPSSPHTEVSTSNSTDTVLPHKRAQEEQESEANWVMKKVKVETSQQFKPLEEDHIEQMIEELLYYGSIELCS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1424 178 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Lele27g1424 178 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Lele27g1424 178 MobiDBLite consensus disorder prediction 101 136 - -
Lele27g1424 178 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Lele27g1424 178 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Lele27g1424 178 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Lele27g1424 178 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 132 - -
Lele27g1424 178 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Lele27g1424 178 MobiDBLite consensus disorder prediction 109 125 - -
Lele27g1424 178 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Lele27g1424 178 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Lele27g1424 178 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1424 Lele-ChrLele27 20507647 20508298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1424 1 178 AP2-EREBP Transcription Factor Family AT5G25190 67.039 2.69e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele27g1424 AP2 7.1e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1424 27 20507647 20508298 Lele01g0671 01 3900297 3902967 CCT
Lele27g1424 27 20507647 20508298 Lele03g0667 03 3909898 3912621 CCT
Lele02g0663 02 3981105 3983011 Lele27g1424 27 20507647 20508298 CCT
Lele03g0673 03 3968328 3970189 Lele27g1424 27 20507647 20508298 CCT
Lele25g0663 25 4168417 4169067 Lele27g1424 27 20507647 20508298 hybridization
Lele26g0672 26 4273050 4273694 Lele27g1424 27 20507647 20508298 hybridization