Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1417 ATGAACCTCGTCACTCTGGTCAATTTTGCTCTGTTTCTCTTCAGCTCGGGTTTCCCGCGAATTCTGGAGCTTTGGTGCCCAGATCCGGTTCTTACTGTGTTCTCAGATGATGTTATGCCTGTTCATCAAGAATTAACGTTCTGGTCATCGCTAATTGCTTCGGGGAAAATGAGTAGCCTGGTTGAGAGGCTTCGTGTAAGATCAGATCGCAAGCCAGTTTATAATCTAGATGATTCAGATGACGATGCTGACTTTTTGCCTGGGAAACCTGGGAGAACTGAGGAAAACTTTGAGAGGATAGTTAGAAGTGATGCTAAAGAGAATTCATGCCAAGCCTGTGGAGAAAGTGAAGATCTTCTAAGCTGTGAAACTTGTACTTATGCTTTCCATCCTAAGTGTTTACTTCGACCACTTAAAGGTCCCCTTCCAGATAATTGGAGGTGCCCTGAATGTGTTAGCCCGTTAAGTGATATTGAAAAGATACTAGATTGTGAGATGCGCCCAACTGTAGCAGGTGATGGCGAGGCCTCAAAACCAGGCTCAAAGCAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTTTCATATCTGCACTGCACGTGGGTTTCAGAGAAAGAGTTTCTGAAAGCTTTCAAGTCACATCCTCGTCTGAAAACCAAGGTGAACAACTTCCACCGTCAAATGGCATCTACAAATACTTCTGATGAAGACTTCGTTGCCATTCGACCTGAATGGACCATGGTTGATCGTATACTTGCTTGCAGGGGTCATGATGATGAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTTCATACCATGAATGCTATTGGGAGTCTGAGTCTGATATTTCTGCATTTCTGCCAGAGATAGAAAGATTTACAAAAATTCAGTCTAGGTCTAGGAAAAGTGCTTCTAGTAAGCAGAAAAGTGGCGGTAAGGATGGTGCTGAAGGAAAAAAGCAGCAGAAAGAATTTCAACACTTTGAACAAAGCCCTAGCTTTCTTTCAGGCGGCACCCTACATCCATATCAGCTTGAAGGCTTGAACTTCTTGCGTTTCTCTTGGTCTAAGCAAACTCACGTTATACTTGCTGATGAAATGGGACTAGGCAAAACCATACAAAGTATTGCTTTTTTAGCATCTCTTTTTGAGGAGAGAGTGTTTCCCCATTTAGTGGTTGCTCCCCTGTCAACTCTCCGAAATTGGGAACGTGAATTTGCAACATGGGCGCCTCAAATGAATGTTGTTATGTATGTTGGATCTGCCCAAGCTCGAACTGTTATAAGAGAGTATGAATTTTACTTCCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGCAAAATAGTCAGTGAAAGCAAGCAAGATAGGATCAAATTTGATGTCCTTTTGACATCATATGAAATGATCAACTTCGACTCAGCATCATTGAAACCTATAATGTGGGAGTGCATTATAGTTGATGAAGGTCACCGACTTAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCAAGCAGACATCGTATACTTTTGACTGGGACTCCTCTTCAGAACAATTTGGATGAACTTTTTATGCTAATGCACTTCCTTGATGCTGGGAAGTTTGGAAGCTTAGAGGAGTTCCAGGAAGAGTTTAGAGATATTAATCAGGAGGAGCAAATATCAAGGCTTCACAAAATGTTGGCTCCGCACCTCCTTCGAAGAGTGAAGAAAGATGTGATGAAGGAGTTACCTCCTAAAAAGGAACTTATTTTAAGAGTTGAGTTAAGCAGCAAACAGAAAGAGTATTATAAGGCAATTTTGACACGTAATTATCAAATATTAACTCGTCGTGGTGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAATTGCGCAAACTATGTTGTCATCCTTATATGTTAGAAGGGGTTGAGCCAGATATTGAAGATCCAAAAGAATCATACAAACAGCTACTGGAATCATCAGGGAAGTTGCAATTGTTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGGCATAGAGTCCTCATATATACACAATTTCAGCACATGCTGGACCTGTTAGAAGATTACTGTTCTTACAAGAATTGGCTGTATGAAAGGATAGATGGCAAGGTTGCTGGAGCTGAAAGACAAGTAAGGATAGATCGGTTTAATGCAAAAAATTCTTCGAGATTTTGCTTTCTTCTTTCCACCAGAGCTGGAGGATTGGGAATAAACCTTGCAACTGCTGACACGGTTATTATATATGACAGCGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTGTAACACGAGGAACCATTGAAGAGAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACATTTGGTTGTTGGAAGGCTAAAGGCTCAAAACATTAATCAGGAAGAGTTGGATGATATCATTAGGTATGGCTCAAAGGAGTTATTTGCTGATGAGAATGATGAAGCTGGTAAATCCCGCCAAATTCATTATGACGATGCTTCAATAGATAGATTGTTGGATCGAGAGCAAGTTGGAGTTGAAGAAGCTATGATGGATGATGAAGACGATGATGGATTTCTGAAGGCTTTTAAGGTGGCAAATTTTGAATATATTGATGAAGTTGAGGCTGCAGCAGAGGAGGCAAGGAAAAAAGAAGTGGAAAATAAAAATACTGTTAACAATTCAGATAGAGCAAATTACTGGGAGGATTTGTTGAGAGACAGATATGAAGAGCATAAAACTGAAGAGTTTAGTTCCTTGGGCAAGGGCAAGCGAAACCGCAAGCTGATGGCTGCTGTTGAGGAGGATGATCTTGCTGGCCTAGAAGATGTAAGTTCTGATGAAGATGACAACTATGAAGCAGATCTTACTGATGGCGATTCAAATTCAACTGGAACTACTTCGGGTAGAAGGCCTTACAGAAAGAAAGCCCGTGCAGCAGATAGTACAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAGATCATTCAGGGTACTTGGTTTCAATCAAAGCCAGAGGGCTCAATTTGTGCAAATTTTGATGAGGTTTGGAGTTGGTGATTATGATTGGAAGGAGTTTACTCCACGTTTGAAACAGAAGACATATGAAGAAATCAAAGATTATGGATTCCTTTTCTTGTCTCATATCGCTGAAGATATAACTGATTCTCCTACATTCTCAGATGGTGTTCCAAAAGAAGGACTAAGAATACATGATGTACTAGTTAGGATTGCAGTTCTTCTCTTGATAAGGGACAAAGTGAAGTTTGCATCAGAAAAGTACCCTGGAACTCTGCTTTACACAGATGACATCTTATTGCGGTATCCTGGTTTGAAGGGTGGAAAGATATGGAAGGAGGAACATGATATAGTGTTAATGCGTGCTGTGTTGAAGCATGGATATGGAAGGTGGCAAGCAATTGTGGATGATAAGGATCTAAAGATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCGTAATAAATTTACCAGTACCAGGACAAGTCGGTACTCCGGTGCAAAATGGTGCAAATTCAACAAATGTAGAAGCACAGGCCAACCGGTCTGGGGAAAATGGTGGGAGTGATATGGTAGCTGATGGTGCGCCGGGTTCTGGTGATGCTAGGAACCAAGCACAGGTATATCAAGACTCTTCAATGTTATATCATTTTAGAGACATGCAGAGAAGACAGGTCGAGTTTGTAAAAAAGAGGGTTCTTCTGTTGGAAAAAGGGCTCTATGCTGAGTACCAGAAAGAATACTTTGGTGACCATAATACTAATGAAGCCATGAATGTAGAATTTAAAAATGAACCAAAGGATTCAAATGTTCCAAGTTGTAAATCAGGGGAGATTGACAAGAAAATGATTGATCAACTGCCTCAATTAGAAGAAATAGCTTCAGAAGAATTGTCTGCTGCTGCATGTGATAGTGACCCAAATCGATCAGAATTGGTTCGACTTTACAATGAGATTTGCAAGGTTGCGGAAGGAAACACCACTGAATTGGCAGGAGGACCGGCAGATGTCAGCTTGACGAAGAACTTGCTTCCCCTTGAAACTGTTTGTGAAGACATCAATAAAATTCTAACACCCACTAAGCAAGATGATGGCACTGCGGAAATGCCAATACTGAGTCCAGGCATCAAATCAGAGGCTTTATCGGAGAGTGAAGTTGCTGGCGCCAGATTGCCCTCAACTCCTCAAGATGACTGCAAACCTGACAATGCAGTGAACGATGGGGGAAAAGATGCGGTGATTGGGTCCGACAACGGAAAAGAAAGTGGATCAGATACAAGGGAAGGTGATGTTGAAATGGGGGAAGCCAGCAATGATGCTGAGATGGATGAAAACGTGGATAAATCTGATCCAGGGGTCGTTGCCTTGGATGGGTAA 4464 0.412 MNLVTLVNFALFLFSSGFPRILELWCPDPVLTVFSDDVMPVHQELTFWSSLIASGKMSSLVERLRVRSDRKPVYNLDDSDDDADFLPGKPGRTEENFERIVRSDAKENSCQACGESEDLLSCETCTYAFHPKCLLRPLKGPLPDNWRCPECVSPLSDIEKILDCEMRPTVAGDGEASKPGSKQIFVKQYLVKWKGLSYLHCTWVSEKEFLKAFKSHPRLKTKVNNFHRQMASTNTSDEDFVAIRPEWTMVDRILACRGHDDEKEYLVKWKELSYHECYWESESDISAFLPEIERFTKIQSRSRKSASSKQKSGGKDGAEGKKQQKEFQHFEQSPSFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEERVFPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARTVIREYEFYFPKKQKKIKKKKSGKIVSESKQDRIKFDVLLTSYEMINFDSASLKPIMWECIIVDEGHRLKNKDSKLFSSLKQYSSRHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDPKESYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCSYKNWLYERIDGKVAGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLVTRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDASIDRLLDREQVGVEEAMMDDEDDDGFLKAFKVANFEYIDEVEAAAEEARKKEVENKNTVNNSDRANYWEDLLRDRYEEHKTEEFSSLGKGKRNRKLMAAVEEDDLAGLEDVSSDEDDNYEADLTDGDSNSTGTTSGRRPYRKKARAADSTEPLPLMEGEGRSFRVLGFNQSQRAQFVQILMRFGVGDYDWKEFTPRLKQKTYEEIKDYGFLFLSHIAEDITDSPTFSDGVPKEGLRIHDVLVRIAVLLLIRDKVKFASEKYPGTLLYTDDILLRYPGLKGGKIWKEEHDIVLMRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPVINLPVPGQVGTPVQNGANSTNVEAQANRSGENGGSDMVADGAPGSGDARNQAQVYQDSSMLYHFRDMQRRQVEFVKKRVLLLEKGLYAEYQKEYFGDHNTNEAMNVEFKNEPKDSNVPSCKSGEIDKKMIDQLPQLEEIASEELSAAACDSDPNRSELVRLYNEICKVAEGNTTELAGGPADVSLTKNLLPLETVCEDINKILTPTKQDDGTAEMPILSPGIKSEALSESEVAGARLPSTPQDDCKPDNAVNDGGKDAVIGSDNGKESGSDTREGDVEMGEASNDAEMDENVDKSDPGVVALDG 1487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1417 1487 Pfam CHD subfamily II, DUF1087 899 960 IPR009463 -
Lele27g1417 1487 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 668 829 IPR001650 -
Lele27g1417 1487 CDD CD2_tandem 246 295 - -
Lele27g1417 1487 SMART helicmild6 694 778 IPR001650 -
Lele27g1417 1487 SMART DUF1087_2 898 963 IPR009463 -
Lele27g1417 1487 ProSitePatterns Zinc finger PHD-type signature. 110 151 IPR019786 -
Lele27g1417 1487 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 77 1348 - -
Lele27g1417 1487 CDD SF2_C_SNF 663 789 - -
Lele27g1417 1487 Gene3D - 156 231 - -
Lele27g1417 1487 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 354 540 IPR014001 -
Lele27g1417 1487 Gene3D - 334 584 IPR038718 -
Lele27g1417 1487 ProSiteProfiles Zinc finger PHD-type profile. 107 154 IPR019787 -
Lele27g1417 1487 MobiDBLite consensus disorder prediction 1414 1487 - -
Lele27g1417 1487 Gene3D - 236 297 - -
Lele27g1417 1487 Gene3D - 1094 1240 - -
Lele27g1417 1487 MobiDBLite consensus disorder prediction 1208 1232 - -
Lele27g1417 1487 ProSiteProfiles Rubredoxin-like domain profile. 117 161 IPR024934 GO:0005506
Lele27g1417 1487 Pfam PHD-finger 110 152 IPR019787 -
Lele27g1417 1487 Pfam Chromo (CHRromatin Organisation MOdifier) domain 158 212 IPR023780 -
Lele27g1417 1487 Pfam Chromo (CHRromatin Organisation MOdifier) domain 249 296 IPR023780 -
Lele27g1417 1487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 575 IPR027417 -
Lele27g1417 1487 MobiDBLite consensus disorder prediction 300 325 - -
Lele27g1417 1487 ProSiteProfiles Chromo and chromo shadow domain profile. 156 238 IPR000953 -
Lele27g1417 1487 Pfam Helicase conserved C-terminal domain 665 778 IPR001650 -
Lele27g1417 1487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 155 IPR013083 -
Lele27g1417 1487 ProSiteProfiles Chromo and chromo shadow domain profile. 248 307 IPR000953 -
Lele27g1417 1487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 577 833 IPR027417 -
Lele27g1417 1487 Pfam SNF2-related domain 362 642 IPR000330 GO:0005524|GO:0140658
Lele27g1417 1487 SMART chromo_7 246 300 IPR000953 -
Lele27g1417 1487 SMART chromo_7 155 224 IPR000953 -
Lele27g1417 1487 SMART ultradead3 338 551 IPR014001 -
Lele27g1417 1487 SMART DUF1086_2 965 1128 IPR009462 GO:0003677|GO:0006338
Lele27g1417 1487 MobiDBLite consensus disorder prediction 961 1010 - -
Lele27g1417 1487 SUPERFAMILY Chromo domain-like 236 300 IPR016197 -
Lele27g1417 1487 Coils Coil 894 917 - -
Lele27g1417 1487 MobiDBLite consensus disorder prediction 961 979 - -
Lele27g1417 1487 Pfam CHD subfamily II, SANT-like domain 990 1120 IPR009462 GO:0003677|GO:0006338
Lele27g1417 1487 Gene3D - 585 809 IPR027417 -
Lele27g1417 1487 SUPERFAMILY Chromo domain-like 122 234 IPR016197 -
Lele27g1417 1487 SMART PHD_3 109 152 IPR001965 -
Lele27g1417 1487 CDD CD1_tandem 158 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1417 Lele-ChrLele27 20438961 20453751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1417 364 839 RAD5 or RAD16-like Gene Family AT1G02670 22.662 1.35e-28 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele27g1417 SNF2_N 4.6e-67 CL0023