Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1415 ATGTCAAAGTATCACCGGAACAACGTCGGATCTCTGGTTCTCGACCATCACGGTCCTACCAGGAATGCAACAGTCGGCGCCCACTGCCGCATATGGAATGCCTTGTCCGCTTCAACAGTACGCCGCATCATTTTTGACGCTGTCAGCTGCGGAGGTGGCTGTCGGCATCACCGCCATCCCCGTAATGACTTTGCCTCCACACCCTCGCCGATTTCGTCAGACTCCGGGAACTCTAAGGACAAGTCGCAAGAACAGAGACAGTGTGCTTCCAGGTCTCAGCCGAAACCAAATGCCAAGTCGGAGAAACTATCGGATCTTCTGAATATAGCGGAGTCTGAAATTGACGCCCAAACGAAGAAAAAAGAAGAGGCATTGCAGGAGCTGAAGAGAATTGTGAAGGAGTTAAAGGTTGAGGATTTGAAAAAGCGGCAAATGGCTGCGGCTAGCGTGAGATTGCTCGCAAAGGAAGACTTGGAAGTCAGAGGGACACTTGCAATGCTTGGAGCCATTCCTCCCCTGGTTGGAATGCTTGATTTGGAAGACGTCAATTCTCAGATCTCTTCTCTCTATGCGTTACTCAATCTTGGAATCGGCAACGACGCAAATAAGGCAGCCATCGTCAAAGTTGGTGCTGTTCACAAAATGCTAAAGCTCACTGAATCACCAACTTGTCCAGATTCATCCGTCTCTGAAGCAGTTGTTGCAAATTTCCTTGGCTTGAGTGCTTTGGATTCGAATAAACCAATAATTGGATCGTCGGGTGGGATTCCCTTCCTGTTTAGAACCCTGGAAAATTCACATGAAAAAACTAGCCCCCAGGCTAAGCAAGATGCTCTCCGAGCACTATTCAATCTATCAATCTTCCCAGCCAACATCTCATTTATATTGGAAACGGATTTGGTTCCGTTTCTGATAAACGCAATAGGAGATATGGAAGTAAGTGAAAGAATTCTCTCAATCCTAAGCAATTTGGTATCAACCCCTGAGGGTCGAAAAGCTATGAGTGCTGTGCGCGATGCATTCCCCATTCTGGTGGATGTATTGAATTGGACAGATTCACCTGGATGCCAGGAAAAAGCATCTTATATTCTGATGATTATGGCACACAAAGCCTATGGTGACAGGCAGGCCATGATCGAGGCTGGGATTGCCTCGTCATTGCTTGAGTTGATGCTTCTGGGCTCTGCGTTGGCACAGAAAAGGGCCTCTAGAATATTGGAATGCTTAAGATTAGACAAAGGGAAGCAGGTATCCGGGAGTTCTGGCGGAAACTTCAGTTCAACTGTATCTGCTCCCATTCGTGGCTCTTCGTCATCTTGTACGAAGCCAGATGGAAGTGGAGAGGAGTGTTTGGAAGAGGAGGAAGATATGATGAGTGACGAGAAGAAGGCAGTGAAGCAATTAGTCCAGCAGAGTTTGCAAAACAACATGAGGAAAATTGTGAAAAGGGCAAATTTGCCTCAAGATTTCGTTCCATCCGACCATTTTAAGGCACTCACTTCAGGATCGACTTCAAAAAGCCTTCCATTTTGA 1533 0.469 MSKYHRNNVGSLVLDHHGPTRNATVGAHCRIWNALSASTVRRIIFDAVSCGGGCRHHRHPRNDFASTPSPISSDSGNSKDKSQEQRQCASRSQPKPNAKSEKLSDLLNIAESEIDAQTKKKEEALQELKRIVKELKVEDLKKRQMAAASVRLLAKEDLEVRGTLAMLGAIPPLVGMLDLEDVNSQISSLYALLNLGIGNDANKAAIVKVGAVHKMLKLTESPTCPDSSVSEAVVANFLGLSALDSNKPIIGSSGGIPFLFRTLENSHEKTSPQAKQDALRALFNLSIFPANISFILETDLVPFLINAIGDMEVSERILSILSNLVSTPEGRKAMSAVRDAFPILVDVLNWTDSPGCQEKASYILMIMAHKAYGDRQAMIEAGIASSLLELMLLGSALAQKRASRILECLRLDKGKQVSGSSGGNFSSTVSAPIRGSSSSCTKPDGSGEECLEEEEDMMSDEKKAVKQLVQQSLQNNMRKIVKRANLPQDFVPSDHFKALTSGSTSKSLPF 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1415 510 MobiDBLite consensus disorder prediction 415 459 - -
Lele27g1415 510 Coils Coil 100 141 - -
Lele27g1415 510 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 24 510 - -
Lele27g1415 510 SMART arm_5 157 197 IPR000225 GO:0005515
Lele27g1415 510 SMART arm_5 199 242 IPR000225 GO:0005515
Lele27g1415 510 SMART arm_5 288 326 IPR000225 GO:0005515
Lele27g1415 510 SMART arm_5 243 287 IPR000225 GO:0005515
Lele27g1415 510 MobiDBLite consensus disorder prediction 417 444 - -
Lele27g1415 510 MobiDBLite consensus disorder prediction 59 101 - -
Lele27g1415 510 Gene3D - 87 268 IPR011989 -
Lele27g1415 510 Gene3D - 269 421 IPR011989 -
Lele27g1415 510 Coils Coil 451 471 - -
Lele27g1415 510 MobiDBLite consensus disorder prediction 1 20 - -
Lele27g1415 510 SUPERFAMILY ARM repeat 127 410 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1415 Lele-ChrLele27 20425467 20427467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1415 123 410 U-box Gene Family AT2G23140 32.180 2.10e-30 123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1415 27 20425467 20427467 Lele02g0663 02 3981105 3983011 CCT
Lele27g1415 27 20425467 20427467 Lele03g0673 03 3968328 3970189 CCT
Lele01g0683 01 4016009 4024576 Lele27g1415 27 20425467 20427467 CCT
Lele02g0671 02 4029613 4033130 Lele27g1415 27 20425467 20427467 CCT
Lele03g0678 03 4023655 4027156 Lele27g1415 27 20425467 20427467 CCT
Lele04g0685 04 4167101 4170369 Lele27g1415 27 20425467 20427467 CCT
Lele25g0674 25 4256202 4258206 Lele27g1415 27 20425467 20427467 hybridization
Lele26g0682 26 4349839 4351835 Lele27g1415 27 20425467 20427467 hybridization