Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1409 ATGGAACCAACGTCGTGCGAGAACACTTTTCTCAGCCTTAACGTTAGCCCTTCTAGGCAAGGGGACGGTGTTCCGGCAGAGGTTTTGATGATGGAAGAGTTGAATTGTTTACGTAGTGAGAAAAAGATGCTAACTGAGAAGCTTAGTCGCGTGACTGAGAGCTACAGTGATCTGAAAAAGCAATTTAACAAAGTGCTTAAGAACACTCAGTTGGACTTAAGCACAGTGTGTGTGAGAGATGGATATCAGTGGAGGAAATATGGTCAGAAGGTGACTAGAGATAACCCTTTTCCTAGGGCTTACTTTAGGTGCTCCTTTGCCCCTAACTGCCCTGTGAAAAAGAAGGTGCAAAGAAGCGCGGAAGACCCAACATTATTGGTGGCGACTTACGAAGGAAAGGACAACCATAGTGGGCAGGGAGCTCAAAGTGAAGGGCTGAATGTGGATGCTGAGCAGAAATCAATCCATTACTATTTGGCTCAACAGATGGCTTCTTCTTTGTCACGAGATCCCATTTTCACATCAGCTCTTGCTTCTGCCCTTTCTGGAAGAATTTTAGATCACAGCACTGTTCCCTAG 579 0.4542 MEPTSCENTFLSLNVSPSRQGDGVPAEVLMMEELNCLRSEKKMLTEKLSRVTESYSDLKKQFNKVLKNTQLDLSTVCVRDGYQWRKYGQKVTRDNPFPRAYFRCSFAPNCPVKKKVQRSAEDPTLLVATYEGKDNHSGQGAQSEGLNVDAEQKSIHYYLAQQMASSLSRDPIFTSALASALSGRILDHSTVP 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1409 192 ProSiteProfiles WRKY domain profile. 80 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele27g1409 192 Pfam WRKY DNA -binding domain 80 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele27g1409 192 SUPERFAMILY WRKY DNA-binding domain 75 137 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele27g1409 192 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 77 139 IPR044810 GO:0003700
Lele27g1409 192 Coils Coil 34 61 - -
Lele27g1409 192 Gene3D WRKY domain 63 138 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele27g1409 192 SMART WRKY_cls 78 138 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1409 Lele-ChrLele27 20371672 20373155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1409 29 189 WRKY Transcription Factor Family AT2G25000 42.478 4.17e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele27g1409 WRKY 1.8e-22 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1409 27 20371672 20373155 Lele01g0681 01 4007951 4010680 CCT
Lele27g1409 27 20371672 20373155 Lele02g0669 02 4022882 4025389 CCT
Lele27g1409 27 20371672 20373155 Lele03g0676 03 4005715 4013557 CCT
Lele27g1409 27 20371672 20373155 Lele04g0683 04 4160702 4162016 CCT
Lele25g0682 25 4316513 4317644 Lele27g1409 27 20371672 20373155 hybridization
Lele26g0687 26 4397674 4398963 Lele27g1409 27 20371672 20373155 hybridization