Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1344 ATGGGTTGGGGTCACCTGGGAAGAAGTGGGCAATCCCACTCGGGTGATCCCAGTACCAGTGCGGAGGCTGCTCACACCAACACCGAACAATCCGTACCTCGGCGATTCCCCCCGGCAGCTCAGCCTGAGATCATGAGAGCGGCTGAGAAGGATGATCAGTATGCCTCTTTCGTCTATGAAGCCTGTCGCGATGCCTTCCGTCACCTCTTTGGTCTGTCCGCTCGAGTCAACCTGACATCTCTGCTTTTCTTGGTTCAGGTACCAGAGTTGCAGTTACCTACCAAAGTGAGGTCAGCACTTTCCTTCATAAATTGTATTCGTGCTGTCTCAGTATATTTTCGGTCCATTTATCCTGGAATGAAACTGTGTTGGTTTGAAGATAGAGTTAACTGTAATGTTATTCTTTTGCAGACAAAACTATTGGGACAAATGCTTTACTATGTGATGACGACAGGTTCAGGACAACAGACGCTCGGAGAGGAATACTGTGACATCACTCAGGTTGGAGGACCTTATGGACTTCCTCCTACTCCTGCAAGGCGTGCTCTTTTCATTGTATGCCAGACAGCTGTTCCATATATTGCAGAACGAATAAGTTCTAGAATTGCTTCCCGAGGAATTGCCCTTGCTGATTCACAATCTGCTGAGATCTATGGTGAAAATGGTACCATTAGGAGTAGTGAATTTCAAACTTCTGATGTGAGTGAACTTCCCTCTTCTACATCAGGGCAGTCTCTTACAACTCTGACAAGGTTGAAGGAGAAACTGAGAAGATTTTGGTTGCATGTAGTTCAGAGACAGTCTACGATGCTTCCTATGGTTCGTGAGTTGTTGCAACTGGTTCTTCGTGCTAATCTTATGTTCTTCTATTTTGAAGGTCTCTATTATCATATATCAAAACGTGCTGCAGGAATTCGATATGTCTTCATTGGAAAATCATTGAATCAAAGGCCCAGATACCAAATTTTGGGTGTATTTCTGTTGATTCAGCTTTGTATAATTGCTGCTGAAGGGCTACGTCGAAGCAATTTATCTTCGACTTCAATTGCAAGTTCAGTTCATCAGACATCCTTTGGGACACACCAGGGATCAGCAGGACGAGGTTTGCCTGTTTTAAATGAAGAGGGTCTTCCGGCATCATCAGATACAGACAAAGGAAATTGGTTATCCGACACTACACATTCTGAGTCCCAAGCAATTAGTGGAGTGAGCAAATGCACGCTCTGCCTGAGTAATCGGCAACACCCAACAGCTACTTCCTGTGGCCATGTATTTTGCTGGAACTGTATAACGGAATGGTGCAACGAAAAGCCAGAATGCCCTCTTTGCCGCACCCCCTTAACACACACAAGTCTAGTGTGCCTGTATCATTCAGACTTCTAG 1383 0.4526 MGWGHLGRSGQSHSGDPSTSAEAAHTNTEQSVPRRFPPAAQPEIMRAAEKDDQYASFVYEACRDAFRHLFGLSARVNLTSLLFLVQVPELQLPTKVRSALSFINCIRAVSVYFRSIYPGMKLCWFEDRVNCNVILLQTKLLGQMLYYVMTTGSGQQTLGEEYCDITQVGGPYGLPPTPARRALFIVCQTAVPYIAERISSRIASRGIALADSQSAEIYGENGTIRSSEFQTSDVSELPSSTSGQSLTTLTRLKEKLRRFWLHVVQRQSTMLPMVRELLQLVLRANLMFFYFEGLYYHISKRAAGIRYVFIGKSLNQRPRYQILGVFLLIQLCIIAAEGLRRSNLSSTSIASSVHQTSFGTHQGSAGRGLPVLNEEGLPASSDTDKGNWLSDTTHSESQAISGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPLTHTSLVCLYHSDF 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1344 460 MobiDBLite consensus disorder prediction 11 34 - -
Lele27g1344 460 FunFam Peroxisome biogenesis factor 10 381 457 - -
Lele27g1344 460 Pfam Ring finger domain 405 444 IPR001841 -
Lele27g1344 460 ProSiteProfiles Zinc finger RING-type profile. 406 444 IPR001841 -
Lele27g1344 460 ProSitePatterns Zinc finger RING-type signature. 421 430 IPR017907 -
Lele27g1344 460 SMART ring_2 406 443 IPR001841 -
Lele27g1344 460 MobiDBLite consensus disorder prediction 1 37 - -
Lele27g1344 460 CDD RING-HC_PEX10 405 444 - -
Lele27g1344 460 SUPERFAMILY RING/U-box 405 449 - -
Lele27g1344 460 Pfam Pex2 / Pex12 amino terminal region 138 341 IPR006845 -
Lele27g1344 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 457 IPR013083 -
Lele27g1344 460 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 37 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1344 Lele-ChrLele27 20025808 20029532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1344 401 456 C3H Transcription Factor Family AT4G27470 39.394 7.85e-10 57.4