Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele27g1342 | ATGGATTCTAAGCATCGAGATTTCAAAGGCGGTGAAGTTAGCATGACGGAAAAGAAAACAAACGAAGGAGATGTGGTGGTGACTATTCCGGGCCAGCAGAATCCGAATCTTACTGGGGGGCGTCAAAGCTCCAAAGTGACTGAATCTAACAATACGTCCACCGGGCACGCTAAGGAGTATGCCTCGCCTGAGCCAAGATCCAGTTCCAGCCCAAACAAGTCTCCAGAAGTTTGTGCTACGACCCGAAACCTTATTCGCAGAAAGTCTCTACAAAGACCAGTTTATTCTAAGCCTAAATCTAGATTCGTGGAACAACCTTATCCTGCTGATGCAACAGTTTTAGAAGAGAATGTCACTTCCACTCTGCAAAAACAACAGCTTGCCTTTGGTTCGCCAAATAACAAATCAGCTACTGGTAATAGGACAGTGTCCATTAGTTCCGTCCCTCCTAAGACGCCGTTGATGGCGTCTCCGGGGCCAGCTGGGGAAGATGAGGATGAAATCGTTTACAGGAAAGTTGAACTGAGTAAAGGGAAGCGTAAGACGGTGAAGGTTAAGGCTTTGATCGAGTGTATTATGCTTGCGTGCATTACGGGAATCTTGGTTGCTAGCCTGACTGTTGAAAAATTGAAAAACGTAATGATTTGGGGGTTGGTGTTTTGGAAGTGGTGTGTACTTCTGATGGTTATCTTTTGTGGGATGTTGATTACCAGATGGTTCATGCACATTATAGTTTTCCTGGTTGAAATGAACTTCTTACTGAGGAAAAAGGTTCTCTATTTTATTCATGGACTAAAGAAAAGTGTCCAGGTCTTCATTTGGCTGGGTCTGGTTCTCCTCGCTTGGGTTCTGTTAATCAATCGCGGGGTCCGGCGATCAGAACTTGACGCAAAAATTTTGACTGGTGTAACATGGACTCTTGTTTCTCTTCTCATTGGATCATTCTTTTGGGTGGTGAAGACGTTGCTGCTGAAGATGTTAGCCTCAAATTTCCATGTCAAATCTTTTTTTGATAGGATTCAAGAATCAATTTTCCATCAGTATGTTTTACAGAGTCTATCTGGGCCTCCATTAATAGAGGATGCTGAGAAGATTGGTAGATCACCAAGTGTTGGCCAGGTGAAGGTCTATCAGGAACGCAAGGCATTGGCGCACGCCTTAAGCGACACCAAGACTGCTGTAAAGCAATTAAACAAGCTTGTGACAGGGATCCTGGTTGTTTTGATCATAATTCTGTGGCTTCTACTGATGGAGATTGCAACAACAAAAGTACTAGTGTTCATTTCATCTCAGCTAGTTGTTGCAACCTTCATGTTTGGAAACACGTGCAAAAATATATTCGAGGCTATCATATTTGTGTTTGTAATGCATCCATTTGATGTTGGCGACCGATGTGTTGTGGATGAGGTTCAGCTATTGGTTGAAGAAATGAACATCTTGACAACGGTGTTCTTGAAACCCAATAATGAGAAGGTGTTCTATCCAAACTCAGTTCTGGCCACAAAACCCATTAGCAATTATTACAGGAGCCCGGATATGGGTGACGCTGTGGACTTTTCAATTGACTTTACGACACCGTTGGAGAGGATTGGGGCTCTAAAGGAAAAAATAAAGAGGTACTTGGAGAGAAATCCGCAACACTGGCGTCCTAATCACATTGTAATAGTGAAGGAGATAGAAAATGTGAACAAGATTAAAATAGCCCTGTATGTTACGCACACAATGAATTTTCAAGACTTCGCGGAGAAGATCAGGAGGAGAACAGAACTGGTGATAGAACTAAAGAAAATAGTTGAGGAGCTCGATATTAGATACTATCTTCTTCCTCAGGCAGTTCATCTCAGCTATGTTCGATCAGACACGGGCCCTCTATAG | 1875 | 0.4304 | MDSKHRDFKGGEVSMTEKKTNEGDVVVTIPGQQNPNLTGGRQSSKVTESNNTSTGHAKEYASPEPRSSSSPNKSPEVCATTRNLIRRKSLQRPVYSKPKSRFVEQPYPADATVLEENVTSTLQKQQLAFGSPNNKSATGNRTVSISSVPPKTPLMASPGPAGEDEDEIVYRKVELSKGKRKTVKVKALIECIMLACITGILVASLTVEKLKNVMIWGLVFWKWCVLLMVIFCGMLITRWFMHIIVFLVEMNFLLRKKVLYFIHGLKKSVQVFIWLGLVLLAWVLLINRGVRRSELDAKILTGVTWTLVSLLIGSFFWVVKTLLLKMLASNFHVKSFFDRIQESIFHQYVLQSLSGPPLIEDAEKIGRSPSVGQVKVYQERKALAHALSDTKTAVKQLNKLVTGILVVLIIILWLLLMEIATTKVLVFISSQLVVATFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVVDEVQLLVEEMNILTTVFLKPNNEKVFYPNSVLATKPISNYYRSPDMGDAVDFSIDFTTPLERIGALKEKIKRYLERNPQHWRPNHIVIVKEIENVNKIKIALYVTHTMNFQDFAEKIRRRTELVIELKKIVEELDIRYYLLPQAVHLSYVRSDTGPL | 624 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele27g1342 | 624 | SUPERFAMILY | Sm-like ribonucleoproteins | 447 | 507 | IPR010920 | - | |
| Lele27g1342 | 624 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Lele27g1342 | 624 | MobiDBLite | consensus disorder prediction | 1 | 97 | - | - | |
| Lele27g1342 | 624 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 374 | 615 | IPR016688 | - | |
| Lele27g1342 | 624 | FunFam | Predicted mechanosensitive ion channel | 458 | 507 | - | - | |
| Lele27g1342 | 624 | Gene3D | - | 458 | 507 | IPR023408 | - | |
| Lele27g1342 | 624 | MobiDBLite | consensus disorder prediction | 26 | 87 | - | - | |
| Lele27g1342 | 624 | Pfam | Mechanosensitive ion channel | 400 | 604 | IPR006685 | GO:0016020|GO:0055085 | |
| Lele27g1342 | 624 | MobiDBLite | consensus disorder prediction | 129 | 151 | - | - | |
| Lele27g1342 | 624 | MobiDBLite | consensus disorder prediction | 129 | 163 | - | - | |
| Lele27g1342 | 624 | PIRSF | Memb_At2g17000 | 373 | 621 | IPR016688 | - | |
| Lele27g1342 | 624 | PIRSF | Memb_At2g17000 | 4 | 370 | IPR016688 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele27g1342 | Lele-ChrLele27 | 20004405 | 20007068 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele27g1342 | 324 | 615 | Mechanosensitive Ion Channel Family | AT5G12080 | 57.096 | 6.67e-114 | 355 |