Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1335 ATGGACGGAGGTGCTCCCTACAATCCTCGCACGGTCGAAGAGGTCTTCAGGGATCTCAAGGGTCGCCGTGCCGGCATGATTAAGGCCCTCACCACCGATGTCGAAGAGTTCTATCAGCAGTGTGATCCTGAGAAGGAGAACCTGTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATCTACCCGCCGAGGAGGTGCCTCCAGAACTTCCAGAACCTGCACTGGGTATTAACTTTGCCAGAGATGGGATGCAAGAAAAAGACTGGCTATCTTTGGTTGCTGTTCACAGTGATGCATGGCTACTTGCCGTAGCCTTTTATTTTGGTGCTAGATTTGGATTTGATAAGGCTGATAGGAAGCGATTGTTTAATATGATAAATGATCTCCCAACAATATTTGAGGTTGTCACTGGGATGGCCAAGAAACAAGGGAAGGAGAAGTCATCAGTTTCGAACCATAGCAGTAACAAATCCAAATCAAACTCTAAGCAAACGCAGCAGAGAGAACCTGAATCTCAAGGAAAGTATTCAAAAGCAATGCAATCAAAGGATGAAGATGAGGAGGGTTTGGATGAAGAAGATGAGGAGGAGCACGGAGAGACCCTTTGTGGAGCATGTGGAGAGAATTATGCAGCTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTTCATGGGAAGTGTGTGAAGATCACCCCTGCAAGGGCTGAACATATCAAGCAGTACAAATGTCCGTCCTGTAGCAACAAGAGAGCTCGACCTTGA 774 0.469 MDGGAPYNPRTVEEVFRDLKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSNKSKSNSKQTQQREPESQGKYSKAMQSKDEDEEGLDEEDEEEHGETLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1335 257 FunFam PHD finger alfin-like protein 196 252 - -
Lele27g1335 257 SUPERFAMILY FYVE/PHD zinc finger 193 254 IPR011011 -
Lele27g1335 257 SMART PHD_3 203 251 IPR001965 -
Lele27g1335 257 MobiDBLite consensus disorder prediction 150 178 - -
Lele27g1335 257 MobiDBLite consensus disorder prediction 145 197 - -
Lele27g1335 257 Pfam PHD-finger 204 253 IPR019787 -
Lele27g1335 257 CDD PHD_AL_plant 203 253 IPR044104 -
Lele27g1335 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 252 IPR013083 -
Lele27g1335 257 ProSitePatterns Zinc finger PHD-type signature. 204 250 IPR019786 -
Lele27g1335 257 ProSiteProfiles Zinc finger PHD-type profile. 201 253 IPR019787 -
Lele27g1335 257 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Lele27g1335 257 PANTHER CPG BINDING PROTEIN 8 256 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1335 Lele-ChrLele27 19964117 19966165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1335 1 256 Alfin-like Transcription Factor Family AT3G42790 77.432 1.45e-128 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lele27g1335 Alfin 2.6e-69 No_clan