Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1323 ATGTCCGTAATTTGTAATTCCTGGTCTACGTTAGTGTCTCTGGTTAAAATATTTGTGGTTATTACTTCTCAAAAGGTTGTTCCGGCATGTGCAATAATGTTATACGCTATATTCCATGTGAACTCTTTTACAATCATGGCTGGCTTGGCAACAGAAGGGTCACAATTTGATGCTCGTCAATTTGATGCGAAGATGAGTGAATTACTTGGAACTGAAGGGCAGGACTTTTTTACTAGTTACGATGAAGTTTATGAAAGCTTTGATGCTATGGGATTGCAGGAGAACCTTCTGAGAGGCATTTATGCGTATGGTTTTGAGAAGCCCTCTGCAATTCAGCAGAGAGGGATTGTTCCTTTCTGCAAGGGTCTTGATGTGATTCAGCAGGCACAATCGGGAACTGGAAAAACTGCCACCTTTTGTTCTGGAGTTTTGCAGCAGCTTGATTACAGCTTAGTTGAATGCCAAGCACTAGTTCTTGCTCCTACTCGTGAACTTGCACAACAAATTGAGAAGGTCATGCGAGCGCTGGGCGACTATCTTGGTGTCAAGGTTCATGCTTGTGTGGGTGGCACCAGTGTCCGAGAAGACCAGCGTATCCTCTCAAGTGGGGTACATGTTGTTGTTGGTACCCCTGGTCGTGTGTTCGACATGCTTCGGAGACAATCTCTCCGCCCTGATTACATTAAAATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCTCGGGGTTTCAAGGATCAGATCTATGATATTTTCCAGCTGCTGCCACCAAAAATCCAGGTTGGGGTTTTCTCCGCCACTATGCCACCTGAGGCTCTTGAAATTACAAGGAAGTTCATGAATAAACCTGTGAGGATCTTGGTGAAGCGTGACGAGCTTACCTTGGAAGGGATCAAGCAATTTTACGTCAATGTTGAGAGAGAGGAATGGAAGCTGGAGACACTTTGTGATCTGTATGAGACTCTGGCAATTACCCAGAGTGTTATCTTTGTGAACACCAGGCGCAAGGTTGATTGGCTCACGGACAAGATGCGCGGCCGTGATCACACTGTTTCTGCAACCCATGGAGATATGGACCAAAACACAAGGGACATCATCATGAGGGAATTCCGTTCTGGGTCTTCCCGCGTTTTAATCACCACAGATTTACTGGCCCGTGGTATTGATGTCCAGCAAGTTTCGCTCGTGATTAATTACGATCTTCCAACCCAGCCAGAGAACTACCTCCATCGAATTGGTCGTAGTGGTCGGTTTGGGAGGAAGGGTGTTGCTATTAATTTTGTGACCAAGGACGATGATAGGATGCTGTTTGACATTCAAAAGTTTTATAATGTGGTGATTGAAGAGCTGCCAGCCAATGTTGCTGATCTCCTTTGA 1377 0.4517 MSVICNSWSTLVSLVKIFVVITSQKVVPACAIMLYAIFHVNSFTIMAGLATEGSQFDARQFDAKMSELLGTEGQDFFTSYDEVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEREEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDDRMLFDIQKFYNVVIEELPANVADLL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1323 458 PANTHER RNA HELICASE 72 442 - -
Lele27g1323 458 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 232 240 IPR000629 -
Lele27g1323 458 CDD DEADc_EIF4A 89 287 - -
Lele27g1323 458 FunFam Eukaryotic initiation factor 4A-III 293 458 - -
Lele27g1323 458 FunFam Eukaryotic initiation factor 4A-II 73 292 - -
Lele27g1323 458 CDD SF2_C_DEAD 298 428 - -
Lele27g1323 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 439 IPR027417 -
Lele27g1323 458 Pfam DEAD/DEAH box helicase 110 271 IPR011545 GO:0003676|GO:0005524
Lele27g1323 458 SMART ultradead3 104 301 IPR014001 -
Lele27g1323 458 Gene3D - 75 293 IPR027417 -
Lele27g1323 458 Gene3D - 294 458 IPR027417 -
Lele27g1323 458 Pfam Helicase conserved C-terminal domain 311 419 IPR001650 -
Lele27g1323 458 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 85 113 IPR014014 GO:0003724
Lele27g1323 458 SMART helicmild6 338 419 IPR001650 -
Lele27g1323 458 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 458 IPR001650 -
Lele27g1323 458 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 116 286 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1323 Lele-ChrLele27 19903738 19906401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1323 46 458 Eukaryotic Initiation Factors Gene Family AT1G72730 88.889 0.0 770