Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1314 ATGATGAAAGCTTTGATGGTGGATGAGAATATGTCCAATTTGACATCTGCATCTAGTGAAATAAGTGCTTCTTCTGGCACTAGAAATGATACTCCTGTCTCTCTCTATCCTCACCAGTACTCCTCTACTTCAACAAATCAAGAACCACAACCCAAAAAGAAGAGAAACCTTCCGGGAAATCCAGACCCAGGGGCTGAAGTAATAGCCTTTTCTCCCAAGACCCTCTTGGCGACGAACCGATTTATTTGCGAAGTATGCAACAAAGGGTTTCAAAGAGACCAAAATCTTCAGCTTCACAGAAGAGGGCACAACTTGCCATGGAAGCTCAAGCAAAGAAACAACAAAGAAGTCATTAGAAAGAAGGTTTATGTGTGTCCGGAGGTAACATGTGTTCACCATCACCCCTCAAGGGCCCTAGGAGACCTCACCGGCATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAAAAATGGAAATGTGAAAAATGCTCCAAGCGTTACGCTGTTCAGTCTGACTGGAAAGCTCACTCTAAGATTTGTGGCACCAAGGAGTACAAATGTGATTGCGGAACCATCTTCTCCAGAAGGGACAGTTTCATCACACACAGAGCCTTCTGTGATGCTTTAGCGCAGGAGAGTGCAAGAGCAATTACAGCAGTGAACCCTCTTCTTCATAGCCATCCCCTCCAAGCTCCACCACCATTACTCACCAAAAAAGAACAAGATTTTCCACCATGGCTGGGAGAATCTGCAACTGGAAACAATTTCAGGCCTTTAATGTCCTCTTCACATTTAGACCAGTCCTTAAATTTAATCCATCACCATCAAAACCCTAATAATAACCCCACACCACCGTCCCTTCCTCGTTTCCAATCCCCAGTTGCCTCTCCTTACATGTCAGCCACTGCTTTGTTGCAGAAAGCTTCACAAATAGGTCACATGCCTCAATCTGATAATCAATGTACCACCATTCCTAATTCATCCTCTTATTCAGCTGTTTCTGGTTTGGGTATGCCTTCACGTGACCAGATGGGGTTGCCTCATCATGCTTTGTCTTCTTATGGGAATAAAGCTGCTGGCTTAGCTTCTGATAATTACTTAGAAGATGGTGCTATTTCTGTACATTGCAATAATAATACAGCATCTGCACCACCACCTACTACTTCTCTTTTTCATGGCGTGATGGTTAATACCGCTTCTACTGTGCCTTCTTCTGCTCCTGCCTTTGATGAGAGGTCTTCTTTCGAGGATGCTTTGAGAGGAATGTTGAATCCAACAAGACACACTGCTAGCGATGAAATGACCCGAGATTTTCTTGGTCTCAATGCATTCTCTCAGAAAGATTTTTTCAACATATCGGGGCTTGACCATTTGGGTTCTTCGTCGCATGGTAAGCCAAGTCGGAACCAGACACCTTGGCAAGGTTAA 1428 0.444 MMKALMVDENMSNLTSASSEISASSGTRNDTPVSLYPHQYSSTSTNQEPQPKKKRNLPGNPDPGAEVIAFSPKTLLATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVIRKKVYVCPEVTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALAQESARAITAVNPLLHSHPLQAPPPLLTKKEQDFPPWLGESATGNNFRPLMSSSHLDQSLNLIHHHQNPNNNPTPPSLPRFQSPVASPYMSATALLQKASQIGHMPQSDNQCTTIPNSSSYSAVSGLGMPSRDQMGLPHHALSSYGNKAAGLASDNYLEDGAISVHCNNNTASAPPPTTSLFHGVMVNTASTVPSSAPAFDERSSFEDALRGMLNPTRHTASDEMTRDFLGLNAFSQKDFFNISGLDHLGSSSHGKPSRNQTPWQG 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1314 475 MobiDBLite consensus disorder prediction 9 53 - -
Lele27g1314 475 SMART c2h2final6 81 103 IPR013087 -
Lele27g1314 475 SMART c2h2final6 158 178 IPR013087 -
Lele27g1314 475 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Lele27g1314 475 Gene3D Classic Zinc Finger 151 216 - -
Lele27g1314 475 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 38 448 IPR031140 -
Lele27g1314 475 SUPERFAMILY beta-beta-alpha zinc fingers 80 178 IPR036236 -
Lele27g1314 475 FunFam protein indeterminate-domain 12-like 60 129 - -
Lele27g1314 475 Gene3D Classic Zinc Finger 64 130 - -
Lele27g1314 475 MobiDBLite consensus disorder prediction 1 66 - -
Lele27g1314 475 FunFam protein indeterminate-domain 5, chloroplastic-like 136 215 - -
Lele27g1314 475 Pfam Zinc-finger double-stranded RNA-binding 81 103 IPR022755 -
Lele27g1314 475 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1314 Lele-ChrLele27 19849851 19851721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1314 7 312 IDZ Gene Family AT1G55110 58.859 6.85e-120 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele27g1314 zf-C2H2_jaz 8e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0762 25 4832847 4834699 Lele27g1314 27 19849851 19851721 hybridization
Lele26g0769 26 4899869 4901725 Lele27g1314 27 19849851 19851721 hybridization